Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 RPP2AYOL039W 321 nt15.75■□□□□ 0.11
RTR1P40084 PTP1YDL230W 1008 nt15.72■□□□□ 0.11
RTR1P40084 YLR154C-GYLR154C-G 150 nt15.72■□□□□ 0.11
RTR1P40084 DCW1YKL046C 1350 nt15.71■□□□□ 0.11
RTR1P40084 PUS2YGL063W 1113 nt15.69■□□□□ 0.1
RTR1P40084 TIR4YOR009W 1464 nt15.59■□□□□ 0.09
RTR1P40084 CAC2YML102W 1407 nt15.59■□□□□ 0.09
RTR1P40084 ART5YGR068C 1761 nt15.57■□□□□ 0.08
RTR1P40084 YJL152WYJL152W 360 nt15.57■□□□□ 0.08
RTR1P40084 YCH1YGR203W 447 nt15.52■□□□□ 0.08
RTR1P40084 SSA4YER103W 1929 nt15.51■□□□□ 0.07
RTR1P40084 GFD2YCL036W 1701 nt15.51■□□□□ 0.07
RTR1P40084 EMI2YDR516C 1503 nt15.49■□□□□ 0.07
RTR1P40084 YPR011CYPR011C 981 nt15.48■□□□□ 0.07
RTR1P40084 PET9YBL030C 957 nt15.47■□□□□ 0.07
RTR1P40084 YLR236CYLR236C 324 nt15.45■□□□□ 0.06
RTR1P40084 DSK2YMR276W 1122 nt15.45■□□□□ 0.06
RTR1P40084 YMR057CYMR057C 372 nt15.41■□□□□ 0.06
RTR1P40084 YDL221WYDL221W 552 nt15.38■□□□□ 0.05
RTR1P40084 IMP2'YIL154C 1041 nt15.37■□□□□ 0.05
RTR1P40084 IRC15YPL017C 1500 nt15.35■□□□□ 0.05
RTR1P40084 RTS2YOR077W 699 nt15.33■□□□□ 0.04
RTR1P40084 YMR090WYMR090W 684 nt15.31■□□□□ 0.04
RTR1P40084 FMP45YDL222C 930 nt15.3■□□□□ 0.04
RTR1P40084 IDH1YNL037C 1083 nt15.3■□□□□ 0.04
RTR1P40084 GIS3YLR094C 1509 nt15.22■□□□□ 0.03
RTR1P40084 YCL048W-AYCL048W-A 240 nt15.22■□□□□ 0.03
RTR1P40084 FPS1YLL043W 2010 nt15.21■□□□□ 0.02
RTR1P40084 GBP2YCL011C 1284 nt15.2■□□□□ 0.02
RTR1P40084 MOT3YMR070W 1473 nt15.19■□□□□ 0.02
RTR1P40084 YBR220CYBR220C 1683 nt15.18■□□□□ 0.02
RTR1P40084 SDH1YKL148C 1923 nt15.17■□□□□ 0.02
RTR1P40084 LPX1YOR084W 1164 nt15.17■□□□□ 0.02
RTR1P40084 CUE1YMR264W 612 nt15.15■□□□□ 0.02
RTR1P40084 YDR433WYDR433W 441 nt15.13■□□□□ 0.01
RTR1P40084 ERV46YAL042W 1248 nt15.13■□□□□ 0.01
RTR1P40084 SCC4YER147C 1875 nt15.11■□□□□ 0.01
RTR1P40084 MXR2YCL033C 507 nt15.06■□□□□ 0
RTR1P40084 RRD1YIL153W 1182 nt15□□□□□ -0.01
RTR1P40084 YKR040CYKR040C 504 nt15□□□□□ -0.01
RTR1P40084 TCD2YKL027W 1344 nt14.99□□□□□ -0.01
RTR1P40084 DED1YOR204W 1815 nt14.99□□□□□ -0.01
RTR1P40084 YIL100WYIL100W 354 nt14.94□□□□□ -0.02
RTR1P40084 SPP1YPL138C 1062 nt14.93□□□□□ -0.02
RTR1P40084 BDF1YLR399C 2061 nt14.9□□□□□ -0.02
RTR1P40084 FMT1YBL013W 1206 nt14.85□□□□□ -0.03
RTR1P40084 FRD1YEL047C 1413 nt14.78□□□□□ -0.04
RTR1P40084 RRT12YCR045C 1476 nt14.74□□□□□ -0.05
RTR1P40084 FMP52YER004W 696 nt14.73□□□□□ -0.05
RTR1P40084 YSC84YHR016C 1407 nt14.73□□□□□ -0.05
RTR1P40084 TAT1YBR069C 1860 nt14.71□□□□□ -0.05
RTR1P40084 SOR2YDL246C 1074 nt14.7□□□□□ -0.06
RTR1P40084 SOR1YJR159W 1074 nt14.7□□□□□ -0.06
RTR1P40084 YNL195CYNL195C 786 nt14.69□□□□□ -0.06
RTR1P40084 YCL042WYCL042W 360 nt14.69□□□□□ -0.06
RTR1P40084 YHL050CYHL050C 2094 nt14.68□□□□□ -0.06
RTR1P40084 CWP1YKL096W 720 nt14.67□□□□□ -0.06
RTR1P40084 ADH2YMR303C 1047 nt14.66□□□□□ -0.06
RTR1P40084 RTG1YOL067C 534 nt14.61□□□□□ -0.07
RTR1P40084 PCM1YEL058W 1674 nt14.6□□□□□ -0.07
RTR1P40084 SEC11YIR022W 504 nt14.56□□□□□ -0.08
RTR1P40084 PTH1YHR189W 573 nt14.55□□□□□ -0.08
RTR1P40084 MRPL8YJL063C 717 nt14.55□□□□□ -0.08
RTR1P40084 YEL076C-AYEL076C-A 651 nt14.52□□□□□ -0.09
RTR1P40084 YEL076CYEL076C 651 nt14.52□□□□□ -0.09
RTR1P40084 YLR464WYLR464W 651 nt14.52□□□□□ -0.09
RTR1P40084 SNF6YHL025W 999 nt14.51□□□□□ -0.09
RTR1P40084 PCH2YBR186W 1695 nt14.49□□□□□ -0.09
RTR1P40084 YLR235CYLR235C 399 nt14.43□□□□□ -0.1
RTR1P40084 GUT2YIL155C 1950 nt14.42□□□□□ -0.1
RTR1P40084 ADO1YJR105W 1023 nt14.39□□□□□ -0.11
RTR1P40084 DIC1YLR348C 897 nt14.38□□□□□ -0.11
RTR1P40084 YIH1YCR059C 777 nt14.37□□□□□ -0.11
RTR1P40084 YKL030WYKL030W 606 nt14.37□□□□□ -0.11
RTR1P40084 RNQ1YCL028W 1218 nt14.36□□□□□ -0.11
RTR1P40084 LCB1YMR296C 1677 nt14.36□□□□□ -0.11
RTR1P40084 SIM1YIL123W 1431 nt14.35□□□□□ -0.11
RTR1P40084 BIO4YNR057C 714 nt14.34□□□□□ -0.11
RTR1P40084 HUA1YGR268C 597 nt14.29□□□□□ -0.12
RTR1P40084 TIM23YNR017W 669 nt14.28□□□□□ -0.12
RTR1P40084 NCP1YHR042W 2076 nt14.27□□□□□ -0.13
RTR1P40084 YLL053CYLL053C 459 nt14.26□□□□□ -0.13
RTR1P40084 PIB2YGL023C 1908 nt14.25□□□□□ -0.13
RTR1P40084 RTF1YGL244W 1677 nt14.21□□□□□ -0.13
RTR1P40084 YLR179CYLR179C 606 nt14.2□□□□□ -0.14
RTR1P40084 BOP3YNL042W 1191 nt14.18□□□□□ -0.14
RTR1P40084 FTR1YER145C 1215 nt14.16□□□□□ -0.14
RTR1P40084 GAL1YBR020W 1587 nt14.13□□□□□ -0.15
RTR1P40084 WSC2YNL283C 1512 nt14.1□□□□□ -0.15
RTR1P40084 TRM5YHR070W 1500 nt14.09□□□□□ -0.15
RTR1P40084 ATF2YGR177C 1608 nt14.08□□□□□ -0.16
RTR1P40084 ERF2YLR246W 1080 nt14.07□□□□□ -0.16
RTR1P40084 AHT1YHR093W 549 nt14.06□□□□□ -0.16
RTR1P40084 YPR064WYPR064W 420 nt14.06□□□□□ -0.16
RTR1P40084 LYS4YDR234W 2082 nt14.05□□□□□ -0.16
RTR1P40084 CRR1YLR213C 1269 nt14.04□□□□□ -0.16
RTR1P40084 AQY1YPR192W 918 nt14.04□□□□□ -0.16
RTR1P40084 UBX6YJL048C 1191 nt14.03□□□□□ -0.16
RTR1P40084 PTK1YKL198C 1989 nt14.02□□□□□ -0.17
RTR1P40084 tL(GAG)GtL(GAG)G 82 nt14□□□□□ -0.17
Retrieved 100 of 7,029 protein–RNA pairs in 12.2 ms