Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 TRM9YML014W 840 nt12.94□□□□□ -0.34
MSH1P25846 YHL050CYHL050C 2094 nt12.92□□□□□ -0.34
MSH1P25846 RTS2YOR077W 699 nt12.91□□□□□ -0.34
MSH1P25846 SIS1YNL007C 1059 nt12.9□□□□□ -0.34
MSH1P25846 GFD2YCL036W 1701 nt12.88□□□□□ -0.35
MSH1P25846 ART5YGR068C 1761 nt12.87□□□□□ -0.35
MSH1P25846 YAL037C-BYAL037C-B 975 nt12.86□□□□□ -0.35
MSH1P25846 RTF1YGL244W 1677 nt12.86□□□□□ -0.35
MSH1P25846 RRT12YCR045C 1476 nt12.85□□□□□ -0.35
MSH1P25846 MOT3YMR070W 1473 nt12.84□□□□□ -0.35
MSH1P25846 CCT6YDR188W 1641 nt12.83□□□□□ -0.36
MSH1P25846 YGR021WYGR021W 873 nt12.81□□□□□ -0.36
MSH1P25846 WWM1YFL010C 636 nt12.75□□□□□ -0.37
MSH1P25846 SUF2tP(AGG)C 72 nt12.73□□□□□ -0.37
MSH1P25846 SUF10tP(AGG)N 72 nt12.73□□□□□ -0.37
MSH1P25846 PTK1YKL198C 1989 nt12.72□□□□□ -0.37
MSH1P25846 HOM6YJR139C 1080 nt12.68□□□□□ -0.38
MSH1P25846 BOP3YNL042W 1191 nt12.68□□□□□ -0.38
MSH1P25846 LSM3YLR438C-A 270 nt12.67□□□□□ -0.38
MSH1P25846 CUE1YMR264W 612 nt12.65□□□□□ -0.38
MSH1P25846 NPL3YDR432W 1245 nt12.63□□□□□ -0.39
MSH1P25846 PET9YBL030C 957 nt12.63□□□□□ -0.39
MSH1P25846 YOR139CYOR139C 393 nt12.63□□□□□ -0.39
MSH1P25846 YFL021C-AYFL021C-A 855 nt12.61□□□□□ -0.39
MSH1P25846 YNL195CYNL195C 786 nt12.59□□□□□ -0.39
MSH1P25846 MNP1YGL068W 585 nt12.58□□□□□ -0.4
MSH1P25846 TIR4YOR009W 1464 nt12.53□□□□□ -0.4
MSH1P25846 YOL037CYOL037C 354 nt12.53□□□□□ -0.4
MSH1P25846 YMR057CYMR057C 372 nt12.52□□□□□ -0.41
MSH1P25846 YIL100WYIL100W 354 nt12.51□□□□□ -0.41
MSH1P25846 RKM5YLR137W 1104 nt12.5□□□□□ -0.41
MSH1P25846 NCP1YHR042W 2076 nt12.47□□□□□ -0.41
MSH1P25846 YFL054CYFL054C 1941 nt12.45□□□□□ -0.42
MSH1P25846 FPS1YLL043W 2010 nt12.44□□□□□ -0.42
MSH1P25846 BOR1YNL275W 1731 nt12.43□□□□□ -0.42
MSH1P25846 YCH1YGR203W 447 nt12.43□□□□□ -0.42
MSH1P25846 SPT8YLR055C 1809 nt12.34□□□□□ -0.43
MSH1P25846 YLR236CYLR236C 324 nt12.33□□□□□ -0.44
MSH1P25846 UME6YDR207C 2511 nt12.32□□□□□ -0.44
MSH1P25846 LCB1YMR296C 1677 nt12.24□□□□□ -0.45
MSH1P25846 YLR281CYLR281C 468 nt12.18□□□□□ -0.46
MSH1P25846 tM(CAU)CtM(CAU)C 72 nt12.16□□□□□ -0.46
MSH1P25846 IMT4tM(CAU)E 72 nt12.16□□□□□ -0.46
MSH1P25846 IMT3tM(CAU)J3 72 nt12.16□□□□□ -0.46
MSH1P25846 IMT1tM(CAU)O1 72 nt12.16□□□□□ -0.46
MSH1P25846 IMT2tM(CAU)P 72 nt12.16□□□□□ -0.46
MSH1P25846 WHI5YOR083W 888 nt12.13□□□□□ -0.47
MSH1P25846 YJL152WYJL152W 360 nt12.12□□□□□ -0.47
MSH1P25846 HSP60YLR259C 1719 nt12.11□□□□□ -0.47
MSH1P25846 SWE1YJL187C 2460 nt12.1□□□□□ -0.47
MSH1P25846 PUS2YGL063W 1113 nt12.1□□□□□ -0.47
MSH1P25846 YCL048W-AYCL048W-A 240 nt12.09□□□□□ -0.47
MSH1P25846 MCH5YOR306C 1566 nt12.05□□□□□ -0.48
MSH1P25846 YLR154C-GYLR154C-G 150 nt12.05□□□□□ -0.48
MSH1P25846 YJL225CYJL225C 5277 nt12.03□□□□□ -0.48
MSH1P25846 IMP2'YIL154C 1041 nt11.98□□□□□ -0.49
MSH1P25846 LYS4YDR234W 2082 nt11.97□□□□□ -0.49
MSH1P25846 ALG12YNR030W 1656 nt11.96□□□□□ -0.5
MSH1P25846 SIM1YIL123W 1431 nt11.93□□□□□ -0.5
MSH1P25846 GLK1YCL040W 1503 nt11.92□□□□□ -0.5
MSH1P25846 DSK2YMR276W 1122 nt11.91□□□□□ -0.5
MSH1P25846 RRD1YIL153W 1182 nt11.84□□□□□ -0.51
MSH1P25846 PCM1YEL058W 1674 nt11.82□□□□□ -0.52
MSH1P25846 FUR4YBR021W 1902 nt11.81□□□□□ -0.52
MSH1P25846 IDH1YNL037C 1083 nt11.79□□□□□ -0.52
MSH1P25846 FMP45YDL222C 930 nt11.78□□□□□ -0.52
MSH1P25846 RDN37-1RDN37-1 5354 nt11.77□□□□□ -0.53
MSH1P25846 RDN37-2RDN37-2 5354 nt11.77□□□□□ -0.53
MSH1P25846 BIO4YNR057C 714 nt11.75□□□□□ -0.53
MSH1P25846 YPR011CYPR011C 981 nt11.71□□□□□ -0.53
MSH1P25846 DED1YOR204W 1815 nt11.71□□□□□ -0.54
MSH1P25846 FMT1YBL013W 1206 nt11.7□□□□□ -0.54
MSH1P25846 FMP52YER004W 696 nt11.69□□□□□ -0.54
MSH1P25846 NAR1YNL240C 1476 nt11.69□□□□□ -0.54
MSH1P25846 ADH2YMR303C 1047 nt11.68□□□□□ -0.54
MSH1P25846 PRP4YPR178W 1398 nt11.67□□□□□ -0.54
MSH1P25846 CWP1YKL096W 720 nt11.65□□□□□ -0.54
MSH1P25846 CCA1YER168C 1641 nt11.64□□□□□ -0.55
MSH1P25846 GBP2YCL011C 1284 nt11.64□□□□□ -0.55
MSH1P25846 SNF6YHL025W 999 nt11.63□□□□□ -0.55
MSH1P25846 YDR433WYDR433W 441 nt11.61□□□□□ -0.55
MSH1P25846 YEL076C-AYEL076C-A 651 nt11.61□□□□□ -0.55
MSH1P25846 YEL076CYEL076C 651 nt11.61□□□□□ -0.55
MSH1P25846 ERV46YAL042W 1248 nt11.61□□□□□ -0.55
MSH1P25846 YLR464WYLR464W 651 nt11.61□□□□□ -0.55
MSH1P25846 AAC1YMR056C 930 nt11.61□□□□□ -0.55
MSH1P25846 DPS1YLL018C 1674 nt11.61□□□□□ -0.55
MSH1P25846 YHR056W-AYHR056W-A 435 nt11.6□□□□□ -0.55
MSH1P25846 MIC10YCL057C-A 294 nt11.59□□□□□ -0.55
MSH1P25846 CRR1YLR213C 1269 nt11.58□□□□□ -0.56
MSH1P25846 TCD2YKL027W 1344 nt11.58□□□□□ -0.56
MSH1P25846 ERF2YLR246W 1080 nt11.57□□□□□ -0.56
MSH1P25846 LPX1YOR084W 1164 nt11.56□□□□□ -0.56
MSH1P25846 BIO5YNR056C 1686 nt11.55□□□□□ -0.56
MSH1P25846 YKR040CYKR040C 504 nt11.54□□□□□ -0.56
MSH1P25846 SNF1YDR477W 1902 nt11.5□□□□□ -0.57
MSH1P25846 HEM12YDR047W 1089 nt11.5□□□□□ -0.57
MSH1P25846 RAX1YOR301W 1308 nt11.49□□□□□ -0.57
MSH1P25846 ATF2YGR177C 1608 nt11.47□□□□□ -0.57
MSH1P25846 YLL053CYLL053C 459 nt11.47□□□□□ -0.57
Retrieved 100 of 7,029 protein–RNA pairs in 12.3 ms