Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 MIR648-201ENST00000385046 94 ntBASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 BX842568.4-201ENST00000421222 227 ntBASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 ALG1L5P-201ENST00000482043 771 ntBASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 GATB-205ENST00000508611 605 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 HOTTIP_1.1-201ENST00000620415 57 ntBASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 AL589702.1-201ENST00000641229 1509 ntBASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DRB4X5D2U9 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 ELL2P1-201ENST00000413990 1906 ntBASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 AC245100.5-201ENST00000452108 331 ntBASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 AC005829.1-201ENST00000570002 483 ntBASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MIR3687-2-201ENST00000577708 61 ntBASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MIR3687-1-201ENST00000614492 61 ntBASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DRB4X5D2U9 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms