Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 AC009090.5-201ENST00000624886 2285 ntBASIC14.03□□□□□ -0.16
NKX3-1Q99801 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 AC106881.1-201ENST00000605849 3329 ntBASIC14.03□□□□□ -0.16
NKX3-1Q99801 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 AC018712.1-201ENST00000455767 687 ntBASIC14.03□□□□□ -0.16
NKX3-1Q99801 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 AC092910.1-201ENST00000482027 1129 ntBASIC14.03□□□□□ -0.16
NKX3-1Q99801 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 IL9RP2-201ENST00000423948 1312 ntBASIC14.03□□□□□ -0.16
NKX3-1Q99801 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 SNX18-202ENST00000343017 3140 ntBASIC14.03□□□□□ -0.16
NKX3-1Q99801 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX3-1Q99801 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX3-1Q99801 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX3-1Q99801 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms