Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL12A1Q99715 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.69□□□□□ -0.22
COL12A1Q99715 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 DDX39AP1-201ENST00000445147 1181 ntBASIC13.69□□□□□ -0.22
COL12A1Q99715 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
COL12A1Q99715 AC013355.1-201ENST00000562625 723 ntBASIC13.69□□□□□ -0.22
COL12A1Q99715 RN7SL48P-201ENST00000579283 293 ntBASIC13.69□□□□□ -0.22
COL12A1Q99715 AC006158.1-201ENST00000610661 249 ntBASIC13.69□□□□□ -0.22
COL12A1Q99715 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.69□□□□□ -0.22
COL12A1Q99715 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC13.68□□□□□ -0.22
COL12A1Q99715 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 AC007274.2-201ENST00000421675 662 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 PDIA3P2-201ENST00000428073 158 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 BRI3P1-201ENST00000440440 378 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 AC010234.1-201ENST00000494599 870 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 FOS-204ENST00000554617 796 ntTSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 AC007881.3-201ENST00000608897 607 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 RNF216P1-203ENST00000404404 2427 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 LINC02012-201ENST00000608206 1725 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
COL12A1Q99715 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 RPL17P45-201ENST00000586289 509 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
COL12A1Q99715 AC092171.5-201ENST00000608012 942 ntBASIC13.68□□□□□ -0.22
COL12A1Q99715 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL12A1Q99715 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL12A1Q99715 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.68□□□□□ -0.22
COL12A1Q99715 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AC000095.1-201ENST00000603208 874 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.67□□□□□ -0.22
COL12A1Q99715 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
COL12A1Q99715 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL12A1Q99715 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.67□□□□□ -0.22
COL12A1Q99715 ACTBP7-201ENST00000418351 1124 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 AL354877.1-201ENST00000424412 413 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC13.67□□□□□ -0.22
COL12A1Q99715 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.67□□□□□ -0.22
COL12A1Q99715 KRT18P64-201ENST00000434946 1219 ntBASIC13.67□□□□□ -0.22
COL12A1Q99715 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL12A1Q99715 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
COL12A1Q99715 DNM1P51-201ENST00000558149 522 ntBASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms