Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 PAUPAR-201ENST00000630360 2965 ntBASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 KRT8P12-202ENST00000472924 1397 ntBASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTCHD1Q96NR3 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTCHD1Q96NR3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 SPDYE17-201ENST00000412399 783 ntBASIC15.08■□□□□ 0
PTCHD1Q96NR3 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 AL080243.2-201ENST00000418783 582 ntBASIC15.08■□□□□ 0
PTCHD1Q96NR3 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
PTCHD1Q96NR3 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 AP001282.1-201ENST00000531301 1499 ntBASIC15.08■□□□□ 0
PTCHD1Q96NR3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.08■□□□□ 0
PTCHD1Q96NR3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms