Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 RNU1-129P-201ENST00000384064 167 ntBASIC13.8□□□□□ -0.2
CMTM3Q96MX0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 U1.21-201ENST00000580816 167 ntBASIC13.8□□□□□ -0.2
CMTM3Q96MX0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 OR2I1P-209ENST00000641730 5365 ntBASIC13.8□□□□□ -0.2
CMTM3Q96MX0 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.8□□□□□ -0.2
CMTM3Q96MX0 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 AC127383.1-201ENST00000444697 1800 ntBASIC13.79□□□□□ -0.2
CMTM3Q96MX0 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 LINC00265-3P-201ENST00000447588 903 ntBASIC13.79□□□□□ -0.2
CMTM3Q96MX0 AC104076.2-201ENST00000448912 469 ntBASIC13.79□□□□□ -0.2
CMTM3Q96MX0 KRT16P4-201ENST00000453883 522 ntBASIC13.79□□□□□ -0.2
CMTM3Q96MX0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.79□□□□□ -0.2
CMTM3Q96MX0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 MIR4515-201ENST00000584082 81 ntBASIC13.79□□□□□ -0.2
CMTM3Q96MX0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 AL121956.5-201ENST00000625261 221 ntBASIC13.79□□□□□ -0.2
CMTM3Q96MX0 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CMTM3Q96MX0 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CMTM3Q96MX0 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms