Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.37□□□□□ -0.43
CCDC140Q96MF4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AZGP1P1-201ENST00000411909 902 ntBASIC12.36□□□□□ -0.43
CCDC140Q96MF4 SPDYE17-201ENST00000412399 783 ntBASIC12.36□□□□□ -0.43
CCDC140Q96MF4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AC093028.1-201ENST00000622998 982 ntBASIC12.36□□□□□ -0.43
CCDC140Q96MF4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.36□□□□□ -0.43
CCDC140Q96MF4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCDC140Q96MF4 AL162727.3-201ENST00000635661 2787 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 AL080243.2-201ENST00000418783 582 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 PHKG1P2-201ENST00000457537 863 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 HNRNPUP1-201ENST00000554987 333 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 AL079307.3-201ENST00000556114 283 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 AC025678.2-201ENST00000562061 970 ntBASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms