Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.27■□□□□ 0.04
RIF1Q5UIP0 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 AL118516.1-201ENST00000564152 670 ntBASIC15.27■□□□□ 0.04
RIF1Q5UIP0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 AC007787.1-201ENST00000588095 1583 ntBASIC15.27■□□□□ 0.04
RIF1Q5UIP0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RIF1Q5UIP0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 MIR4754-201ENST00000582477 89 ntBASIC15.27■□□□□ 0.03
RIF1Q5UIP0 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 ZACNP1-201ENST00000612259 710 ntBASIC15.27■□□□□ 0.03
RIF1Q5UIP0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
RIF1Q5UIP0 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AC136604.1-201ENST00000418535 575 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 FO393412.1-201ENST00000619841 382 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AL023803.2-201ENST00000620080 638 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AL133267.1-201ENST00000398220 340 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AC245100.5-201ENST00000452108 331 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 REEP5-205ENST00000504247 480 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 RN7SL48P-201ENST00000579283 293 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AC068587.8-201ENST00000641239 219 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 ABALON-201ENST00000629058 1903 ntBASIC15.26■□□□□ 0.03
RIF1Q5UIP0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RIF1Q5UIP0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RIF1Q5UIP0 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RIF1Q5UIP0 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms