Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
PDLIM3Q53GG5 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 CR383656.12-201ENST00000549567 513 ntBASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AC093520.2-201ENST00000561830 333 ntBASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AC018845.2-201ENST00000568326 409 ntBASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AC006557.2-201ENST00000592985 1240 ntBASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AL358472.5-202ENST00000641448 1267 ntBASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.37□□□□□ -0.27
PDLIM3Q53GG5 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 TFAMP1-201ENST00000412727 736 ntBASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 ACTG1P14-201ENST00000446382 1122 ntBASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.36□□□□□ -0.27
PDLIM3Q53GG5 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms