Protein–RNA interactions for Protein: Q4JDL3

PTPN20, Tyrosine-protein phosphatase non-receptor type 20, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20Q4JDL3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 AL138828.2-201ENST00000615812 383 ntBASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN20Q4JDL3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 AC136604.1-201ENST00000418535 575 ntBASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 AC107890.1-201ENST00000422478 521 ntBASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 HLA-V-204ENST00000476601 1289 ntBASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN20Q4JDL3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 FO538757.1-201ENST00000623083 1397 ntBASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 FO393414.2-201ENST00000405153 598 ntBASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 FAM86GP-201ENST00000448322 971 ntBASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 AC140878.1-201ENST00000565277 250 ntBASIC16.77■□□□□ 0.28
PTPN20Q4JDL3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms