Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
NEK3P51956 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
NEK3P51956 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
NEK3P51956 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 AP3S2-216ENST00000617003 1561 ntBASIC16.53■□□□□ 0.24
NEK3P51956 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
NEK3P51956 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.53■□□□□ 0.24
NEK3P51956 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.53■□□□□ 0.24
NEK3P51956 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.53■□□□□ 0.24
NEK3P51956 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.53■□□□□ 0.24
NEK3P51956 DUX4L27-201ENST00000554796 1261 ntBASIC16.53■□□□□ 0.24
NEK3P51956 SPTSSB-204ENST00000617024 1292 ntBASIC16.53■□□□□ 0.24
NEK3P51956 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 FOXO1B-201ENST00000504678 1527 ntBASIC16.53■□□□□ 0.24
NEK3P51956 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
NEK3P51956 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
NEK3P51956 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.53■□□□□ 0.24
NEK3P51956 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NEK3P51956 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NEK3P51956 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.52■□□□□ 0.24
NEK3P51956 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NEK3P51956 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.52■□□□□ 0.24
NEK3P51956 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.52■□□□□ 0.24
NEK3P51956 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.52■□□□□ 0.24
NEK3P51956 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NEK3P51956 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
NEK3P51956 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NEK3P51956 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NEK3P51956 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NEK3P51956 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
NEK3P51956 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
NEK3P51956 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.52■□□□□ 0.24
NEK3P51956 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
NEK3P51956 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.52■□□□□ 0.24
NEK3P51956 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NEK3P51956 AC140878.1-201ENST00000565277 250 ntBASIC16.52■□□□□ 0.24
NEK3P51956 AC005498.2-205ENST00000593218 784 ntBASIC16.52■□□□□ 0.24
NEK3P51956 AC018529.1-201ENST00000613063 361 ntBASIC16.52■□□□□ 0.24
NEK3P51956 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.52■□□□□ 0.24
NEK3P51956 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
NEK3P51956 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NEK3P51956 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
NEK3P51956 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.52■□□□□ 0.23
NEK3P51956 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NEK3P51956 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.52■□□□□ 0.23
NEK3P51956 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NEK3P51956 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
NEK3P51956 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.51■□□□□ 0.23
NEK3P51956 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.51■□□□□ 0.23
NEK3P51956 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 MIR943-201ENST00000401286 94 ntBASIC16.51■□□□□ 0.23
NEK3P51956 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 AC098859.1-201ENST00000502915 1238 ntBASIC16.51■□□□□ 0.23
NEK3P51956 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.51■□□□□ 0.23
NEK3P51956 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.51■□□□□ 0.23
NEK3P51956 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.51■□□□□ 0.23
NEK3P51956 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.51■□□□□ 0.23
NEK3P51956 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms