Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CTCFP49711 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC18.41■□□□□ 0.54
CTCFP49711 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CTCFP49711 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.41■□□□□ 0.54
CTCFP49711 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CTCFP49711 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CTCFP49711 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CTCFP49711 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CTCFP49711 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CTCFP49711 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.4■□□□□ 0.54
CTCFP49711 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 AC080080.1-201ENST00000625121 2420 ntBASIC18.4■□□□□ 0.54
CTCFP49711 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CTCFP49711 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.4■□□□□ 0.54
CTCFP49711 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18.4■□□□□ 0.54
CTCFP49711 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC18.4■□□□□ 0.54
CTCFP49711 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC18.4■□□□□ 0.54
CTCFP49711 AC007274.2-201ENST00000421675 662 ntBASIC18.4■□□□□ 0.54
CTCFP49711 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CTCFP49711 AC098935.1-201ENST00000446057 611 ntBASIC18.4■□□□□ 0.54
CTCFP49711 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 AC125604.1-201ENST00000496255 707 ntBASIC18.4■□□□□ 0.54
CTCFP49711 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.4■□□□□ 0.54
CTCFP49711 AC073352.2-201ENST00000609385 439 ntBASIC18.4■□□□□ 0.54
CTCFP49711 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.4■□□□□ 0.54
CTCFP49711 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CTCFP49711 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.4■□□□□ 0.54
CTCFP49711 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CTCFP49711 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.4■□□□□ 0.54
CTCFP49711 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTCFP49711 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CTCFP49711 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CTCFP49711 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.39■□□□□ 0.54
CTCFP49711 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
CTCFP49711 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.39■□□□□ 0.53
CTCFP49711 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CTCFP49711 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.39■□□□□ 0.53
CTCFP49711 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.39■□□□□ 0.53
CTCFP49711 AC022137.2-201ENST00000503482 481 ntBASIC18.39■□□□□ 0.53
CTCFP49711 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.39■□□□□ 0.53
CTCFP49711 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.39■□□□□ 0.53
CTCFP49711 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 RN7SL574P-201ENST00000581512 297 ntBASIC18.39■□□□□ 0.53
CTCFP49711 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 AL136301.1-201ENST00000615830 422 ntBASIC18.39■□□□□ 0.53
CTCFP49711 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.39■□□□□ 0.53
CTCFP49711 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTCFP49711 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CTCFP49711 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.39■□□□□ 0.53
CTCFP49711 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 AC133963.1-201ENST00000504166 1679 ntBASIC18.38■□□□□ 0.53
CTCFP49711 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CTCFP49711 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 AC093724.1-201ENST00000448659 1027 ntBASIC18.38■□□□□ 0.53
CTCFP49711 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 RN7SL8P-201ENST00000461771 266 ntBASIC18.38■□□□□ 0.53
CTCFP49711 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC18.38■□□□□ 0.53
CTCFP49711 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.38■□□□□ 0.53
CTCFP49711 NPM1P43-201ENST00000558669 786 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms