Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18■□□□□ 0.47
ALDH1A1P00352 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 SDCCAG3P2-201ENST00000326105 1023 ntBASIC17.99■□□□□ 0.47
ALDH1A1P00352 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 NKAIN1P1-201ENST00000435754 582 ntBASIC17.99■□□□□ 0.47
ALDH1A1P00352 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 AC114812.1-204ENST00000449669 728 ntBASIC17.99■□□□□ 0.47
ALDH1A1P00352 AC044849.1-201ENST00000519737 1188 ntBASIC17.99■□□□□ 0.47
ALDH1A1P00352 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 ECM1P1-201ENST00000604092 1279 ntBASIC17.99■□□□□ 0.47
ALDH1A1P00352 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 AC079336.7-201ENST00000623428 1078 ntBASIC17.99■□□□□ 0.47
ALDH1A1P00352 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
ALDH1A1P00352 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ALDH1A1P00352 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 AC026471.1-201ENST00000564629 3026 ntBASIC17.98■□□□□ 0.47
ALDH1A1P00352 TUBBP5-203ENST00000508529 1334 ntBASIC17.98■□□□□ 0.47
ALDH1A1P00352 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 FGFR3P5-201ENST00000564496 886 ntBASIC17.98■□□□□ 0.47
ALDH1A1P00352 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 AC091544.8-201ENST00000619490 361 ntBASIC17.98■□□□□ 0.47
ALDH1A1P00352 AC100757.4-201ENST00000626934 759 ntBASIC17.98■□□□□ 0.47
ALDH1A1P00352 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALDH1A1P00352 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
ALDH1A1P00352 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ALDH1A1P00352 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 EEF1DP6-201ENST00000449232 372 ntBASIC17.97■□□□□ 0.47
ALDH1A1P00352 RN7SL11P-201ENST00000471305 293 ntBASIC17.97■□□□□ 0.47
ALDH1A1P00352 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ALDH1A1P00352 SDHD-202ENST00000525291 790 ntTSL 3 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms