Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.44■□□□□ 0.06
SLC28A1O00337 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
SLC28A1O00337 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
SLC28A1O00337 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.43■□□□□ 0.06
SLC28A1O00337 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 AC004987.2-201ENST00000395959 1148 ntBASIC15.43■□□□□ 0.06
SLC28A1O00337 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 TFAMP1-201ENST00000412727 736 ntBASIC15.43■□□□□ 0.06
SLC28A1O00337 AL590627.1-203ENST00000421194 1026 ntBASIC15.43■□□□□ 0.06
SLC28A1O00337 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.43■□□□□ 0.06
SLC28A1O00337 FAM86C2P-203ENST00000528684 1004 ntBASIC15.43■□□□□ 0.06
SLC28A1O00337 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 AC027601.4-201ENST00000611259 610 ntBASIC15.43■□□□□ 0.06
SLC28A1O00337 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.43■□□□□ 0.06
SLC28A1O00337 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.43■□□□□ 0.06
SLC28A1O00337 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 AC105250.1-201ENST00000509378 2057 ntBASIC15.43■□□□□ 0.06
SLC28A1O00337 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC28A1O00337 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.43■□□□□ 0.06
SLC28A1O00337 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.43■□□□□ 0.06
SLC28A1O00337 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC28A1O00337 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 DBET-201ENST00000630918 3363 ntBASIC15.42■□□□□ 0.06
SLC28A1O00337 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SLC28A1O00337 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.42■□□□□ 0.06
SLC28A1O00337 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 KRT18P3-201ENST00000451602 1288 ntBASIC15.42■□□□□ 0.06
SLC28A1O00337 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.42■□□□□ 0.06
SLC28A1O00337 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC28A1O00337 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC28A1O00337 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.42■□□□□ 0.06
SLC28A1O00337 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SLC28A1O00337 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.42■□□□□ 0.06
SLC28A1O00337 AL135744.1-201ENST00000565098 629 ntBASIC15.42■□□□□ 0.06
SLC28A1O00337 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC28A1O00337 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.42■□□□□ 0.06
SLC28A1O00337 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC28A1O00337 FAM197Y3-203ENST00000618346 717 ntBASIC15.42■□□□□ 0.06
SLC28A1O00337 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms