Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 MROH4P-201ENST00000431302 1578 ntBASIC16.66■□□□□ 0.26
CCDC188H7C350 HCG4P8-203ENST00000443049 980 ntBASIC16.66■□□□□ 0.26
CCDC188H7C350 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC188H7C350 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC188H7C350 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 TP73-AS1-207ENST00000624167 988 ntBASIC16.66■□□□□ 0.26
CCDC188H7C350 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC188H7C350 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 AL390755.1-201ENST00000623716 2027 ntBASIC16.65■□□□□ 0.26
CCDC188H7C350 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC188H7C350 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC188H7C350 AC023908.3-201ENST00000564211 3047 ntBASIC16.65■□□□□ 0.26
CCDC188H7C350 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCDC188H7C350 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC188H7C350 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC188H7C350 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC188H7C350 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCDC188H7C350 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC188H7C350 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC188H7C350 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC188H7C350 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.65■□□□□ 0.26
CCDC188H7C350 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC188H7C350 AC243562.2-201ENST00000561247 970 ntBASIC16.65■□□□□ 0.26
CCDC188H7C350 AC012640.2-201ENST00000561606 901 ntBASIC16.65■□□□□ 0.26
CCDC188H7C350 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC188H7C350 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC188H7C350 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC188H7C350 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC188H7C350 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC188H7C350 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC188H7C350 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC188H7C350 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC188H7C350 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.26
CCDC188H7C350 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC188H7C350 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC188H7C350 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCDC188H7C350 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC188H7C350 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC188H7C350 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC188H7C350 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC188H7C350 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC188H7C350 AC127383.1-201ENST00000444697 1800 ntBASIC16.64■□□□□ 0.25
CCDC188H7C350 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CCDC188H7C350 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms