Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AC091046.1-201ENST00000331871 207 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AL008707.1-201ENST00000422498 534 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AL133466.1-201ENST00000447582 150 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AC243562.2-201ENST00000561247 970 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AC138649.2-201ENST00000615886 705 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AP001505.2-201ENST00000616815 443 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AC006453.4-201ENST00000636949 1252 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 AC245100.5-201ENST00000452108 331 ntBASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 AC015910.1-201ENST00000579400 975 ntBASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 REXO1L8P-201ENST00000604378 1897 ntBASIC19.17■□□□□ 0.66
ZC3H4Q9UPT8 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 GGT4P-201ENST00000623672 1708 ntBASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 BCL2-203ENST00000589955 5011 ntBASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 HSPB1P2-201ENST00000448722 546 ntBASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 RNA5SP486-201ENST00000515961 83 ntBASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 AL451050.2-201ENST00000606967 682 ntBASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 AL353726.2-201ENST00000623259 884 ntBASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 AP001094.4-201ENST00000579008 2176 ntBASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.16■□□□□ 0.66
ZC3H4Q9UPT8 AL138709.1-201ENST00000614840 1693 ntBASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZC3H4Q9UPT8 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms