Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 MIR648-201ENST00000385046 94 ntBASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 AC241585.1-201ENST00000433527 519 ntBASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 HMGN1P19-201ENST00000436976 333 ntBASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 AC093214.1-201ENST00000511688 1107 ntBASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 AL590560.3-201ENST00000623350 461 ntBASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 CYP4F24P-201ENST00000586049 1580 ntBASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 LINC02199-201ENST00000506655 2702 ntBASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 KRT8P12-202ENST00000472924 1397 ntBASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 TEX28P1-201ENST00000613479 1221 ntBASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 TEX28P2-201ENST00000617764 1221 ntBASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 AL390754.1-201ENST00000619088 582 ntBASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 AC100757.3-201ENST00000622361 1406 ntBASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM39Q9HCM9 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AL512638.1-201ENST00000457493 794 ntBASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms