Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SPDYE19P-201ENST00000338590 713 ntBASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 SLC7A15P-201ENST00000424028 1363 ntBASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 AC092364.2-201ENST00000596710 2692 ntBASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 AC244107.1-201ENST00000442033 332 ntBASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 AC025048.3-201ENST00000590609 569 ntBASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 AC005702.4-201ENST00000618393 416 ntBASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAIPQ9BWF2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 AC008894.3-201ENST00000624324 3103 ntBASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 AC022188.1-201ENST00000620960 1664 ntBASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAIPQ9BWF2 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 AC004987.2-201ENST00000395959 1148 ntBASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms