Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 IL9RP2-201ENST00000423948 1312 ntBASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 SLC25A1P1-201ENST00000528351 927 ntBASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 AC091951.1-201ENST00000512854 2465 ntBASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATG4AQ8WYN0 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 AC002056.1-201ENST00000395613 760 ntBASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TPM4P1-201ENST00000436100 807 ntBASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms