Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 EEF1DP1-201ENST00000585891 896 ntBASIC13.08□□□□□ -0.32
VPS13CQ709C8 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
VPS13CQ709C8 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS13CQ709C8 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AC022188.1-201ENST00000620960 1664 ntBASIC13.07□□□□□ -0.32
VPS13CQ709C8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AC104596.2-201ENST00000512793 793 ntBASIC13.07□□□□□ -0.32
VPS13CQ709C8 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.07□□□□□ -0.32
VPS13CQ709C8 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 AC044849.1-201ENST00000519737 1188 ntBASIC13.07□□□□□ -0.32
VPS13CQ709C8 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 NDUFV2P1-201ENST00000596415 907 ntBASIC13.07□□□□□ -0.32
VPS13CQ709C8 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS13CQ709C8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.07□□□□□ -0.32
VPS13CQ709C8 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
VPS13CQ709C8 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS13CQ709C8 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
VPS13CQ709C8 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS13CQ709C8 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.06□□□□□ -0.32
VPS13CQ709C8 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.06□□□□□ -0.32
VPS13CQ709C8 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.06□□□□□ -0.32
VPS13CQ709C8 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.06□□□□□ -0.32
VPS13CQ709C8 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS13CQ709C8 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS13CQ709C8 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS13CQ709C8 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
VPS13CQ709C8 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.06□□□□□ -0.32
VPS13CQ709C8 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.06□□□□□ -0.32
VPS13CQ709C8 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS13CQ709C8 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms