Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LMO4P61968 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LMO4P61968 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
LMO4P61968 AL596087.1-201ENST00000400979 1969 ntBASIC13.05□□□□□ -0.32
LMO4P61968 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.05□□□□□ -0.32
LMO4P61968 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LMO4P61968 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LMO4P61968 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LMO4P61968 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LMO4P61968 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.04□□□□□ -0.32
LMO4P61968 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.04□□□□□ -0.32
LMO4P61968 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.04□□□□□ -0.32
LMO4P61968 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.04□□□□□ -0.32
LMO4P61968 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 SLC25A47P1-201ENST00000531577 414 ntBASIC13.04□□□□□ -0.32
LMO4P61968 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 AC124283.3-201ENST00000570869 594 ntBASIC13.04□□□□□ -0.32
LMO4P61968 AL049840.4-201ENST00000602422 811 ntBASIC13.04□□□□□ -0.32
LMO4P61968 AC000095.1-201ENST00000603208 874 ntBASIC13.04□□□□□ -0.32
LMO4P61968 INTS4P2-202ENST00000614726 2019 ntBASIC13.04□□□□□ -0.32
LMO4P61968 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.04□□□□□ -0.32
LMO4P61968 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
LMO4P61968 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.04□□□□□ -0.32
LMO4P61968 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
LMO4P61968 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.04□□□□□ -0.32
LMO4P61968 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LMO4P61968 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 AL121723.1-201ENST00000445194 1519 ntBASIC13.03□□□□□ -0.32
LMO4P61968 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
LMO4P61968 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 AC079328.2-201ENST00000561241 3354 ntBASIC13.03□□□□□ -0.32
LMO4P61968 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.03□□□□□ -0.32
LMO4P61968 MTHFR-217ENST00000641820 1569 ntBASIC13.03□□□□□ -0.32
LMO4P61968 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.03□□□□□ -0.32
LMO4P61968 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
LMO4P61968 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
LMO4P61968 SOCS2P1-201ENST00000417727 557 ntBASIC13.03□□□□□ -0.32
LMO4P61968 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.03□□□□□ -0.32
LMO4P61968 AC234783.1-201ENST00000441761 496 ntBASIC13.03□□□□□ -0.32
LMO4P61968 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 CROCCP4-201ENST00000457096 498 ntBASIC13.03□□□□□ -0.32
LMO4P61968 VDAC1P7-201ENST00000462417 847 ntBASIC13.03□□□□□ -0.32
LMO4P61968 KRT18P43-201ENST00000469825 1281 ntBASIC13.03□□□□□ -0.32
LMO4P61968 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.03□□□□□ -0.32
LMO4P61968 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.03□□□□□ -0.32
LMO4P61968 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
LMO4P61968 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms