Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 SOD2-201ENST00000337404 991 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 PRYP5-201ENST00000451909 266 ntBASIC12.1□□□□□ -0.47
FOXA3P55318 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC12.1□□□□□ -0.47
FOXA3P55318 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC12.1□□□□□ -0.47
FOXA3P55318 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 CYP2A7P1-201ENST00000595391 815 ntBASIC12.1□□□□□ -0.47
FOXA3P55318 COPE-211ENST00000600932 1144 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
FOXA3P55318 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 AC090616.6-203ENST00000579186 1945 ntBASIC12.09□□□□□ -0.47
FOXA3P55318 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC12.09□□□□□ -0.47
FOXA3P55318 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC12.09□□□□□ -0.47
FOXA3P55318 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 VENTXP7-201ENST00000475503 772 ntBASIC12.09□□□□□ -0.47
FOXA3P55318 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC12.09□□□□□ -0.47
FOXA3P55318 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC12.09□□□□□ -0.47
FOXA3P55318 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 AC010331.1-201ENST00000611423 582 ntBASIC12.09□□□□□ -0.47
FOXA3P55318 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
FOXA3P55318 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms