Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
VCPP55072 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.17■□□□□ 0.34
VCPP55072 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VCPP55072 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.17■□□□□ 0.34
VCPP55072 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
VCPP55072 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.17■□□□□ 0.34
VCPP55072 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.17■□□□□ 0.34
VCPP55072 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 AC068587.10-201ENST00000641210 219 ntBASIC17.17■□□□□ 0.34
VCPP55072 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
VCPP55072 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCPP55072 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.17■□□□□ 0.34
VCPP55072 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VCPP55072 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.16■□□□□ 0.34
VCPP55072 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VCPP55072 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.16■□□□□ 0.34
VCPP55072 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.16■□□□□ 0.34
VCPP55072 LINC01144-201ENST00000626198 1710 ntBASIC17.16■□□□□ 0.34
VCPP55072 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.16■□□□□ 0.34
VCPP55072 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.16■□□□□ 0.34
VCPP55072 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.16■□□□□ 0.34
VCPP55072 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.16■□□□□ 0.34
VCPP55072 POU5F1P6-201ENST00000466990 990 ntBASIC17.16■□□□□ 0.34
VCPP55072 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 AC106886.1-201ENST00000568660 600 ntBASIC17.16■□□□□ 0.34
VCPP55072 AC021097.1-201ENST00000607902 574 ntBASIC17.16■□□□□ 0.34
VCPP55072 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VCPP55072 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.16■□□□□ 0.34
VCPP55072 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VCPP55072 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.16■□□□□ 0.34
VCPP55072 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.16■□□□□ 0.34
VCPP55072 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 AL513477.1-201ENST00000602865 2407 ntBASIC17.16■□□□□ 0.34
VCPP55072 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCPP55072 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.16■□□□□ 0.34
VCPP55072 AC024909.3-201ENST00000611513 2257 ntBASIC17.16■□□□□ 0.34
VCPP55072 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.15■□□□□ 0.34
VCPP55072 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
VCPP55072 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.15■□□□□ 0.34
VCPP55072 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
VCPP55072 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.15■□□□□ 0.34
VCPP55072 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VCPP55072 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.15■□□□□ 0.34
VCPP55072 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.15■□□□□ 0.34
VCPP55072 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 AC003101.2-201ENST00000612557 442 ntBASIC17.15■□□□□ 0.34
VCPP55072 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms