Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CXCL12P48061 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CXCL12P48061 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.77■□□□□ 0.12
CXCL12P48061 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CXCL12P48061 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.77■□□□□ 0.12
CXCL12P48061 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.77■□□□□ 0.12
CXCL12P48061 HOMER2P2-201ENST00000451621 847 ntBASIC15.77■□□□□ 0.12
CXCL12P48061 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.77■□□□□ 0.12
CXCL12P48061 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 HNRNPUP1-201ENST00000554987 333 ntBASIC15.77■□□□□ 0.12
CXCL12P48061 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CXCL12P48061 ACTG1P17-201ENST00000558391 1119 ntBASIC15.77■□□□□ 0.12
CXCL12P48061 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.77■□□□□ 0.12
CXCL12P48061 AC104982.3-201ENST00000581995 514 ntBASIC15.77■□□□□ 0.12
CXCL12P48061 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 AC107373.2-201ENST00000607735 490 ntBASIC15.77■□□□□ 0.12
CXCL12P48061 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
CXCL12P48061 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.77■□□□□ 0.11
CXCL12P48061 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.77■□□□□ 0.11
CXCL12P48061 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.77■□□□□ 0.11
CXCL12P48061 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CXCL12P48061 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.77■□□□□ 0.11
CXCL12P48061 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
CXCL12P48061 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 AL662890.1-201ENST00000396818 632 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 FNTAP2-201ENST00000430308 634 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 MTX1P1-201ENST00000440904 838 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 AC005077.2-201ENST00000449786 690 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.76■□□□□ 0.11
CXCL12P48061 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.76■□□□□ 0.11
CXCL12P48061 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.76■□□□□ 0.11
CXCL12P48061 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.76■□□□□ 0.11
CXCL12P48061 AC020914.3-201ENST00000594712 304 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CXCL12P48061 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CXCL12P48061 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 AC005695.3-201ENST00000614522 232 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 AC145423.3-201ENST00000615987 467 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 AC068880.1-201ENST00000507289 2297 ntBASIC15.76■□□□□ 0.11
CXCL12P48061 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.76■□□□□ 0.11
CXCL12P48061 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CXCL12P48061 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.76■□□□□ 0.11
CXCL12P48061 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms