Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.48■□□□□ 0.55
SCN4AP35499 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.47■□□□□ 0.55
SCN4AP35499 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SCN4AP35499 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SCN4AP35499 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.47■□□□□ 0.55
SCN4AP35499 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SCN4AP35499 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC18.47■□□□□ 0.55
SCN4AP35499 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.47■□□□□ 0.55
SCN4AP35499 EIF3FP3-201ENST00000434851 1086 ntBASIC18.47■□□□□ 0.55
SCN4AP35499 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC18.47■□□□□ 0.55
SCN4AP35499 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SCN4AP35499 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.47■□□□□ 0.55
SCN4AP35499 AC068587.8-201ENST00000641239 219 ntBASIC18.47■□□□□ 0.55
SCN4AP35499 KRT8P14-201ENST00000414254 1442 ntBASIC18.47■□□□□ 0.55
SCN4AP35499 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.47■□□□□ 0.55
SCN4AP35499 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SCN4AP35499 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SCN4AP35499 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.47■□□□□ 0.55
SCN4AP35499 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SCN4AP35499 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SCN4AP35499 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.46■□□□□ 0.55
SCN4AP35499 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.46■□□□□ 0.55
SCN4AP35499 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SCN4AP35499 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 AC006335.1-201ENST00000445200 547 ntBASIC18.46■□□□□ 0.55
SCN4AP35499 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 IGLV3-15-201ENST00000518356 244 ntBASIC18.46■□□□□ 0.55
SCN4AP35499 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.46■□□□□ 0.55
SCN4AP35499 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.46■□□□□ 0.55
SCN4AP35499 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 AC120498.9-201ENST00000339021 3867 ntBASIC18.46■□□□□ 0.55
SCN4AP35499 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
SCN4AP35499 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN4AP35499 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
SCN4AP35499 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SCN4AP35499 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SCN4AP35499 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SCN4AP35499 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 AL139094.1-201ENST00000405549 1188 ntBASIC18.45■□□□□ 0.54
SCN4AP35499 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN4AP35499 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.45■□□□□ 0.54
SCN4AP35499 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.45■□□□□ 0.54
SCN4AP35499 RNMTL1P1-201ENST00000454103 560 ntBASIC18.45■□□□□ 0.54
SCN4AP35499 OR10B1P-201ENST00000601666 907 ntBASIC18.45■□□□□ 0.54
SCN4AP35499 AP001065.2-201ENST00000617205 644 ntBASIC18.45■□□□□ 0.54
SCN4AP35499 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.45■□□□□ 0.54
SCN4AP35499 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.45■□□□□ 0.54
SCN4AP35499 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.45■□□□□ 0.54
SCN4AP35499 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.45■□□□□ 0.54
SCN4AP35499 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN4AP35499 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
SCN4AP35499 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SCN4AP35499 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN4AP35499 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms