Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.434e-7■■□□□ 12.1
RPS3P23396 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.374e-7■■□□□ 12.1
RPS3P23396 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.55■□□□□ 0.244e-7■■□□□ 12.1
RPS3P23396 RER1-208ENST00000493207 686 ntTSL 216.53■□□□□ 0.244e-7■■□□□ 12.1
RPS3P23396 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.099e-19■■□□□ 12.1
RPS3P23396 SLC5A9-204ENST00000441260 1046 ntTSL 215.6■□□□□ 0.094e-7■■□□□ 12.1
RPS3P23396 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.098e-10■■□□□ 12.1
RPS3P23396 TMEM161A-212ENST00000591031 744 ntTSL 315.44■□□□□ 0.064e-7■■□□□ 12.1
RPS3P23396 AC118553.2-201ENST00000638968 3175 ntTSL 515.42■□□□□ 0.064e-7■■□□□ 12.1
RPS3P23396 SLC5A9-202ENST00000425816 1950 ntTSL 1 (best)15.38■□□□□ 0.054e-7■■□□□ 12.1
RPS3P23396 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.024e-7■■□□□ 12.1
RPS3P23396 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.92□□□□□ -0.024e-7■■□□□ 12.1
RPS3P23396 CIC-208ENST00000575839 335 ntTSL 514.64□□□□□ -0.074e-7■■□□□ 12.1
RPS3P23396 C16orf58-210ENST00000568491 2422 ntTSL 214.42□□□□□ -0.12e-7■■□□□ 12.1
RPS3P23396 LY6E-208ENST00000520531 490 ntTSL 2 BASIC13.35□□□□□ -0.274e-7■■□□□ 12.1
RPS3P23396 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.284e-7■■□□□ 12.1
RPS3P23396 MYH9-202ENST00000401701 789 ntTSL 1 (best) BASIC12.83□□□□□ -0.368e-10■■□□□ 12.1
RPS3P23396 AC118553.2-208ENST00000640357 3488 ntTSL 512.73□□□□□ -0.374e-7■■□□□ 12.1
RPS3P23396 CIC-204ENST00000572681 8218 ntTSL 5 BASIC12.35□□□□□ -0.434e-7■■□□□ 12.1
RPS3P23396 KIAA0319L-202ENST00000373266 2377 ntTSL 5 BASIC12.33□□□□□ -0.448e-10■■□□□ 12.1
RPS3P23396 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.464e-7■■□□□ 12.1
RPS3P23396 PROS1-202ENST00000394236 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.554e-7■■□□□ 12.1
RPS3P23396 MYH9-203ENST00000456729 449 ntTSL 311.33□□□□□ -0.68e-10■■□□□ 12.1
RPS3P23396 AC118553.2-206ENST00000639171 5352 ntTSL 511.02□□□□□ -0.654e-7■■□□□ 12.1
RPS3P23396 PHC2-211ENST00000486897 547 ntTSL 510.29□□□□□ -0.764e-7■■□□□ 12.1
RPS3P23396 SLC5A9-206ENST00000493837 3769 ntTSL 210.09□□□□□ -0.794e-7■■□□□ 12.1
RPS3P23396 SLC5A9-201ENST00000236495 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.814e-7■■□□□ 12.1
RPS3P23396 G6PC3-206ENST00000590639 851 ntTSL 58.92□□□□□ -0.981e-11■■□□□ 12.1
RPS3P23396 FGL1-208ENST00000519055 640 ntTSL 57.63□□□□□ -1.192e-20■■□□□ 12.1
RPS3P23396 ATRAID-203ENST00000419744 612 ntTSL 27.08□□□□□ -1.284e-7■■□□□ 12.1
RPS3P23396 AC118553.2-207ENST00000640238 2901 ntTSL 56.39□□□□□ -1.394e-7■■□□□ 12.1
RPS3P23396 C5-205ENST00000489802 382 ntTSL 32.12□□□□□ -2.074e-7■■□□□ 12.1
RPS3P23396 DCTN1-221ENST00000491465 2444 ntTSL 1 (best)14.55□□□□□ -0.089e-7■■□□□ 12
RPS3P23396 AC006030.1-201ENST00000451608 5059 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.789e-7■■□□□ 12
RPS3P23396 ERGIC3-219ENST00000496172 781 ntTSL 210.14□□□□□ -0.794e-7■■□□□ 12
RPS3P23396 BCAM-205ENST00000589558 611 ntTSL 219.29■□□□□ 0.681e-6■■□□□ 12
RPS3P23396 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.857e-23■■□□□ 12
RPS3P23396 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.017e-23■■□□□ 12
RPS3P23396 GSPT1-201ENST00000420576 1603 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.937e-23■■□□□ 12
RPS3P23396 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.73■■□□□ 1.078e-10■■□□□ 12
RPS3P23396 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.338e-10■■□□□ 12
RPS3P23396 KLF3-202ENST00000482150 517 ntTSL 213.84□□□□□ -0.198e-10■■□□□ 12
RPS3P23396 CTNNA1-237ENST00000523275 536 ntTSL 511.29□□□□□ -0.66e-12■■□□□ 12
RPS3P23396 CTNNA1-235ENST00000522730 750 ntTSL 29.81□□□□□ -0.846e-12■■□□□ 12
RPS3P23396 CTNNA1-203ENST00000517534 416 ntTSL 27.95□□□□□ -1.148e-10■■□□□ 12
RPS3P23396 ARG2-204ENST00000557319 627 ntTSL 24.66□□□□□ -1.662e-6■■□□□ 12
RPS3P23396 GSPT1-208ENST00000565267 1864 ntTSL 58.6□□□□□ -1.038e-7■■□□□ 12
RPS3P23396 GSPT1-206ENST00000563468 1962 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.118e-7■■□□□ 12
RPS3P23396 FDFT1-212ENST00000528643 1909 ntTSL 2 BASIC8.25□□□□□ -1.096e-15■■□□□ 12
RPS3P23396 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.92□□□□□ -1.36e-15■■□□□ 12
RPS3P23396 CANX-205ENST00000502673 1000 ntTSL 510.92□□□□□ -0.665e-10■■□□□ 12
RPS3P23396 RELN-207ENST00000478148 612 ntTSL 35.57□□□□□ -1.528e-13■■□□□ 12
RPS3P23396 ERGIC3-205ENST00000413587 977 ntTSL 512.06□□□□□ -0.482e-7■■□□□ 12
RPS3P23396 AURKB-203ENST00000577833 867 ntTSL 310.11□□□□□ -0.799e-7■■□□□ 12
RPS3P23396 PTPRF-206ENST00000429895 6312 ntTSL 1 (best)14.7□□□□□ -0.061e-6■■□□□ 12
RPS3P23396 EPRS-202ENST00000464052 770 ntTSL 22.43□□□□□ -2.028e-8■■□□□ 12
RPS3P23396 PRKCSH-210ENST00000589990 567 ntTSL 211.92□□□□□ -0.52e-18■■□□□ 12
RPS3P23396 DDX5-219ENST00000581697 580 ntTSL 514.97□□□□□ -0.013e-14■■□□□ 12
RPS3P23396 HYOU1-208ENST00000531682 319 ntTSL 211.9□□□□□ -0.57e-9■■□□□ 12
RPS3P23396 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.513e-8■■□□□ 12
RPS3P23396 COG8-207ENST00000562949 887 ntTSL 312.78□□□□□ -0.363e-8■■□□□ 12
RPS3P23396 FN1-223ENST00000490833 699 ntTSL 36.32□□□□□ -1.49e-68■■□□□ 12
RPS3P23396 MPP1-213ENST00000482757 989 ntTSL 28.31□□□□□ -1.086e-10■■□□□ 12
RPS3P23396 MPP1-216ENST00000491955 2378 ntTSL 26.07□□□□□ -1.446e-10■■□□□ 12
RPS3P23396 RPL18-210ENST00000550671 764 ntTSL 212.56□□□□□ -0.42e-24■■□□□ 12
RPS3P23396 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.434e-8■■□□□ 12
RPS3P23396 SMOC1-202ENST00000381280 3666 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.584e-8■■□□□ 12
RPS3P23396 THBS1-202ENST00000397591 582 ntTSL 216.68■□□□□ 0.263e-18■■□□□ 12
RPS3P23396 A2M-202ENST00000404455 623 ntTSL 54.95□□□□□ -1.626e-61■■□□□ 12
RPS3P23396 LDLR-210ENST00000559340 605 ntTSL 59.12□□□□□ -0.953e-8■■□□□ 12
RPS3P23396 CRLF1-204ENST00000596360 413 ntTSL 215.68■□□□□ 0.11e-11■■□□□ 12
RPS3P23396 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.06■□□□□ 0.482e-8■■□□□ 12
RPS3P23396 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.97□□□□□ -0.171e-6■■□□□ 12
RPS3P23396 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC12.29□□□□□ -0.441e-6■■□□□ 12
RPS3P23396 CPPED1-202ENST00000381774 6273 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.481e-6■■□□□ 12
RPS3P23396 RPS14-207ENST00000521466 592 ntAPPRIS P1 TSL 512.71□□□□□ -0.373e-10■■□□□ 12
RPS3P23396 RPS14-204ENST00000518139 669 ntTSL 311.26□□□□□ -0.613e-10■■□□□ 12
RPS3P23396 AAAS-212ENST00000548931 1075 ntTSL 511.86□□□□□ -0.514e-6■■□□□ 12
RPS3P23396 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.66■■□□□ 1.227e-7■■□□□ 12
RPS3P23396 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.65■■□□□ 1.227e-7■■□□□ 12
RPS3P23396 PON2-212ENST00000490778 694 ntTSL 522.63■■□□□ 1.217e-7■■□□□ 12
RPS3P23396 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.197e-7■■□□□ 12
RPS3P23396 PON2-204ENST00000455123 1515 ntTSL 1 (best)22.43■■□□□ 1.187e-7■■□□□ 12
RPS3P23396 PON2-208ENST00000469926 645 ntTSL 320.31■□□□□ 0.847e-7■■□□□ 12
RPS3P23396 PON2-214ENST00000493290 550 ntTSL 416.78■□□□□ 0.287e-7■■□□□ 12
RPS3P23396 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.277e-7■■□□□ 12
RPS3P23396 PON2-216ENST00000632034 570 ntTSL 23.67□□□□□ -1.827e-7■■□□□ 12
RPS3P23396 PON2-203ENST00000446142 1099 ntTSL 1 (best)3.34□□□□□ -1.877e-7■■□□□ 12
RPS3P23396 VARS-219ENST00000461328 662 ntTSL 314.93□□□□□ -0.021e-13■■□□□ 12
RPS3P23396 PRKCSH-216ENST00000592445 598 ntTSL 218.49■□□□□ 0.553e-10■■□□□ 12
RPS3P23396 MARCH6-203ENST00000502795 580 ntTSL 413.75□□□□□ -0.212e-9■■□□□ 12
RPS3P23396 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.383e-9■■□□□ 12
RPS3P23396 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.343e-9■■□□□ 12
RPS3P23396 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.313e-9■■□□□ 12
RPS3P23396 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.123e-9■■□□□ 12
RPS3P23396 ALB-207ENST00000486939 345 ntTSL 21.33□□□□□ -2.21e-323■■□□□ 12
RPS3P23396 RPL23-201ENST00000245857 588 ntTSL 3 BASIC10.12□□□□□ -0.799e-21■■□□□ 12
RPS3P23396 BTG1-201ENST00000256015 4680 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.418e-18■■□□□ 12
RPS3P23396 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.13□□□□□ -0.154e-6■■□□□ 12
RPS3P23396 AKR1C2-204ENST00000460124 2639 ntTSL 57.32□□□□□ -1.244e-6■■□□□ 12
Retrieved 100 of 24,271 protein–RNA pairs in 253.8 ms