Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.08■□□□□ 0
COL5A1P20908 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.08■□□□□ 0
COL5A1P20908 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.08■□□□□ 0
COL5A1P20908 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
COL5A1P20908 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.08■□□□□ 0
COL5A1P20908 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
COL5A1P20908 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 MIR663B-201ENST00000408361 115 ntBASIC15.08■□□□□ 0
COL5A1P20908 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
COL5A1P20908 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.08■□□□□ 0
COL5A1P20908 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
COL5A1P20908 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.08■□□□□ 0
COL5A1P20908 ACTG1P17-201ENST00000558391 1119 ntBASIC15.08■□□□□ 0
COL5A1P20908 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.08■□□□□ 0
COL5A1P20908 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.08■□□□□ 0
COL5A1P20908 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
COL5A1P20908 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
COL5A1P20908 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
COL5A1P20908 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL5A1P20908 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 AC138028.6-201ENST00000616106 1482 ntBASIC15.07■□□□□ 0
COL5A1P20908 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 MIR648-201ENST00000385046 94 ntBASIC15.07■□□□□ 0
COL5A1P20908 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.07■□□□□ 0
COL5A1P20908 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.07■□□□□ 0
COL5A1P20908 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
COL5A1P20908 AP006547.1-201ENST00000563435 692 ntBASIC15.07■□□□□ 0
COL5A1P20908 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.07■□□□□ 0
COL5A1P20908 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 EEF1DP1-201ENST00000585891 896 ntBASIC15.07■□□□□ 0
COL5A1P20908 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.07■□□□□ 0
COL5A1P20908 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 AL021578.1-201ENST00000613646 709 ntBASIC15.07■□□□□ 0
COL5A1P20908 AC145423.3-201ENST00000615987 467 ntBASIC15.07■□□□□ 0
COL5A1P20908 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.07■□□□□ 0
COL5A1P20908 AC006453.4-201ENST00000636949 1252 ntBASIC15.07■□□□□ 0
COL5A1P20908 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 AL118508.1-201ENST00000613502 2345 ntBASIC15.07■□□□□ 0
COL5A1P20908 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL5A1P20908 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.07■□□□□ 0
COL5A1P20908 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.07■□□□□ 0
COL5A1P20908 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.06■□□□□ 0
COL5A1P20908 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.06■□□□□ 0
COL5A1P20908 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms