Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.45□□□□□ -0.1
SPTA1P02549 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.45□□□□□ -0.1
SPTA1P02549 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.45□□□□□ -0.1
SPTA1P02549 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.45□□□□□ -0.1
SPTA1P02549 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.45□□□□□ -0.1
SPTA1P02549 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
SPTA1P02549 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.45□□□□□ -0.1
SPTA1P02549 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.45□□□□□ -0.1
SPTA1P02549 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
SPTA1P02549 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
SPTA1P02549 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.45□□□□□ -0.1
SPTA1P02549 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.45□□□□□ -0.1
SPTA1P02549 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 MIR33B-201ENST00000385104 96 ntBASIC14.45□□□□□ -0.1
SPTA1P02549 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.45□□□□□ -0.1
SPTA1P02549 BAATP1-201ENST00000412284 1225 ntBASIC14.45□□□□□ -0.1
SPTA1P02549 AC124947.2-201ENST00000547118 1133 ntBASIC14.45□□□□□ -0.1
SPTA1P02549 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
SPTA1P02549 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.45□□□□□ -0.1
SPTA1P02549 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SPTA1P02549 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SPTA1P02549 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
SPTA1P02549 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.45□□□□□ -0.1
SPTA1P02549 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.45□□□□□ -0.1
SPTA1P02549 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SPTA1P02549 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.45□□□□□ -0.1
SPTA1P02549 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.44□□□□□ -0.1
SPTA1P02549 PKD1P5-201ENST00000532415 10291 ntBASIC14.44□□□□□ -0.1
SPTA1P02549 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
SPTA1P02549 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.44□□□□□ -0.1
SPTA1P02549 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.44□□□□□ -0.1
SPTA1P02549 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.44□□□□□ -0.1
SPTA1P02549 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SPTA1P02549 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.44□□□□□ -0.1
SPTA1P02549 AC020765.3-201ENST00000613051 740 ntBASIC14.44□□□□□ -0.1
SPTA1P02549 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.44□□□□□ -0.1
SPTA1P02549 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SPTA1P02549 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.44□□□□□ -0.1
SPTA1P02549 AC009053.2-201ENST00000563701 2365 ntBASIC14.44□□□□□ -0.1
SPTA1P02549 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.44□□□□□ -0.1
SPTA1P02549 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SPTA1P02549 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.44□□□□□ -0.1
SPTA1P02549 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.44□□□□□ -0.1
SPTA1P02549 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.44□□□□□ -0.1
SPTA1P02549 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.44□□□□□ -0.1
SPTA1P02549 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms