Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC20.79■□□□□ 0.92
COL3A1P02461 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 AC092127.1-201ENST00000567093 3455 ntBASIC20.79■□□□□ 0.92
COL3A1P02461 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC20.79■□□□□ 0.92
COL3A1P02461 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC20.79■□□□□ 0.92
COL3A1P02461 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC20.79■□□□□ 0.92
COL3A1P02461 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 WARS-232ENST00000556645 2508 ntTSL 5 BASIC20.79■□□□□ 0.92
COL3A1P02461 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 C1QBPP1-201ENST00000400117 770 ntBASIC20.79■□□□□ 0.92
COL3A1P02461 AC007389.4-201ENST00000454674 793 ntBASIC20.79■□□□□ 0.92
COL3A1P02461 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC20.79■□□□□ 0.92
COL3A1P02461 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.79■□□□□ 0.92
COL3A1P02461 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.79■□□□□ 0.92
COL3A1P02461 SNX29P1-201ENST00000548357 1007 ntBASIC20.79■□□□□ 0.92
COL3A1P02461 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC20.79■□□□□ 0.92
COL3A1P02461 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.79■□□□□ 0.92
COL3A1P02461 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 CU634019.7-201ENST00000624153 1185 ntBASIC20.79■□□□□ 0.92
COL3A1P02461 FP236241.2-201ENST00000624906 1185 ntBASIC20.79■□□□□ 0.92
COL3A1P02461 AL033527.5-201ENST00000641382 801 ntBASIC20.79■□□□□ 0.92
COL3A1P02461 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL3A1P02461 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL3A1P02461 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.78■□□□□ 0.92
COL3A1P02461 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
COL3A1P02461 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC20.78■□□□□ 0.92
COL3A1P02461 AC104457.1-201ENST00000401024 814 ntBASIC20.78■□□□□ 0.92
COL3A1P02461 AC134915.1-201ENST00000426461 574 ntBASIC20.78■□□□□ 0.92
COL3A1P02461 KRT17P7-201ENST00000451704 1104 ntBASIC20.78■□□□□ 0.92
COL3A1P02461 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.78■□□□□ 0.92
COL3A1P02461 PUDP-206ENST00000540122 825 ntTSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 AC093525.8-201ENST00000624099 1342 ntBASIC20.78■□□□□ 0.92
COL3A1P02461 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC20.78■□□□□ 0.92
COL3A1P02461 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 AC007950.2-201ENST00000615045 2347 ntBASIC20.78■□□□□ 0.92
COL3A1P02461 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 CICP13-201ENST00000422015 2789 ntBASIC20.78■□□□□ 0.92
COL3A1P02461 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL3A1P02461 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL3A1P02461 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.77■□□□□ 0.92
COL3A1P02461 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC20.77■□□□□ 0.92
COL3A1P02461 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.77■□□□□ 0.92
COL3A1P02461 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.77■□□□□ 0.92
COL3A1P02461 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.77■□□□□ 0.92
COL3A1P02461 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COL3A1P02461 DKFZP434H168-201ENST00000567381 1905 ntBASIC20.77■□□□□ 0.92
COL3A1P02461 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC20.77■□□□□ 0.92
COL3A1P02461 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
COL3A1P02461 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL3A1P02461 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms