Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AC105250.1-201ENST00000509378 2057 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AJ011931.1-201ENST00000618749 2492 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AC117489.1-201ENST00000625169 3217 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 COPE-203ENST00000351079 907 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AC022616.7-201ENST00000525383 220 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 ZNF444P1-201ENST00000559497 298 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 RBM42-202ENST00000586618 771 ntTSL 3 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 FGF14-AS2-201ENST00000606448 1074 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AC010327.5-201ENST00000586923 3061 ntBASIC12.12□□□□□ -0.47
HLA-DQA1P01909 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 MED25-212ENST00000618715 1467 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 PC-214ENST00000628663 1470 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DQA1P01909 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 AL592424.1-201ENST00000563624 1536 ntBASIC12.11□□□□□ -0.47
HLA-DQA1P01909 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms