Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.46■□□□□ 0.07
SLC28A1O00337 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.46■□□□□ 0.07
SLC28A1O00337 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.46■□□□□ 0.07
SLC28A1O00337 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
SLC28A1O00337 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SLC28A1O00337 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
SLC28A1O00337 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
SLC28A1O00337 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
SLC28A1O00337 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
SLC28A1O00337 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
SLC28A1O00337 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
SLC28A1O00337 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
SLC28A1O00337 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.45■□□□□ 0.06
SLC28A1O00337 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
SLC28A1O00337 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.45■□□□□ 0.06
SLC28A1O00337 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.45■□□□□ 0.06
SLC28A1O00337 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.45■□□□□ 0.06
SLC28A1O00337 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.45■□□□□ 0.06
SLC28A1O00337 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.45■□□□□ 0.06
SLC28A1O00337 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.45■□□□□ 0.06
SLC28A1O00337 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 AC023157.3-201ENST00000619086 2088 ntBASIC15.45■□□□□ 0.06
SLC28A1O00337 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
SLC28A1O00337 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.45■□□□□ 0.06
SLC28A1O00337 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SLC28A1O00337 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SLC28A1O00337 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.44■□□□□ 0.06
SLC28A1O00337 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.44■□□□□ 0.06
SLC28A1O00337 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.44■□□□□ 0.06
SLC28A1O00337 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
SLC28A1O00337 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.44■□□□□ 0.06
SLC28A1O00337 AL671277.1-201ENST00000429656 993 ntBASIC15.44■□□□□ 0.06
SLC28A1O00337 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.44■□□□□ 0.06
SLC28A1O00337 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.44■□□□□ 0.06
SLC28A1O00337 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.44■□□□□ 0.06
SLC28A1O00337 AC027307.2-201ENST00000591252 911 ntBASIC15.44■□□□□ 0.06
SLC28A1O00337 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.44■□□□□ 0.06
SLC28A1O00337 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.44■□□□□ 0.06
SLC28A1O00337 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 AC008267.7-201ENST00000624570 1194 ntBASIC15.44■□□□□ 0.06
SLC28A1O00337 AC092865.6-201ENST00000642101 219 ntBASIC15.44■□□□□ 0.06
SLC28A1O00337 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SLC28A1O00337 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.44■□□□□ 0.06
SLC28A1O00337 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms