Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CCDC188H7C350 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
CCDC188H7C350 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC188H7C350 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC188H7C350 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CCDC188H7C350 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC188H7C350 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC188H7C350 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC188H7C350 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC188H7C350 PMS2P7-201ENST00000506558 1336 ntBASIC16.69■□□□□ 0.26
CCDC188H7C350 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
CCDC188H7C350 AC009090.5-201ENST00000624886 2285 ntBASIC16.68■□□□□ 0.26
CCDC188H7C350 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.68■□□□□ 0.26
CCDC188H7C350 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
CCDC188H7C350 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC188H7C350 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CCDC188H7C350 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC188H7C350 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC188H7C350 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC188H7C350 AC092474.2-201ENST00000424288 719 ntBASIC16.67■□□□□ 0.26
CCDC188H7C350 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.67■□□□□ 0.26
CCDC188H7C350 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC188H7C350 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 PRELID1P1-202ENST00000567272 903 ntBASIC16.67■□□□□ 0.26
CCDC188H7C350 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC188H7C350 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
CCDC188H7C350 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC188H7C350 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC188H7C350 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC188H7C350 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC188H7C350 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC188H7C350 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms