Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.66■□□□□ 0.9
PDZRN3Q9UPQ7 LINC01144-201ENST00000626198 1710 ntBASIC20.66■□□□□ 0.9
PDZRN3Q9UPQ7 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDZRN3Q9UPQ7 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC20.66■□□□□ 0.9
PDZRN3Q9UPQ7 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
PDZRN3Q9UPQ7 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 AL512384.1-201ENST00000406683 331 ntBASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 MTND6P24-201ENST00000440466 518 ntBASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 AC135586.1-201ENST00000539323 574 ntBASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 HILS1-202ENST00000545329 423 ntBASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
PDZRN3Q9UPQ7 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.64■□□□□ 0.9
PDZRN3Q9UPQ7 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 RN7SL752P-201ENST00000463779 287 ntBASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 AC010336.2-201ENST00000564226 506 ntBASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 AC105021.1-202ENST00000570572 669 ntBASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 IGHV3-72-202ENST00000621503 303 ntBASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDZRN3Q9UPQ7 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDZRN3Q9UPQ7 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms