Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 AC008735.3-201ENST00000596646 500 ntBASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.97■□□□□ 0.31
PAAF1Q9BRP4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 MIR648-201ENST00000385046 94 ntBASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 AC010319.3-201ENST00000597028 470 ntBASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 PRORSD1P-202ENST00000563365 2154 ntBASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PAAF1Q9BRP4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PAAF1Q9BRP4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PAAF1Q9BRP4 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.96■□□□□ 0.3
PAAF1Q9BRP4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.96■□□□□ 0.3
PAAF1Q9BRP4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
PAAF1Q9BRP4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.96■□□□□ 0.3
PAAF1Q9BRP4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PAAF1Q9BRP4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms