Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP28Q96RU2 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
USP28Q96RU2 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP28Q96RU2 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP28Q96RU2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 MIR940-201ENST00000401276 94 ntBASIC18.33■□□□□ 0.52
USP28Q96RU2 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.33■□□□□ 0.52
USP28Q96RU2 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USP28Q96RU2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.33■□□□□ 0.52
USP28Q96RU2 RNA5SP410-201ENST00000516285 106 ntBASIC18.33■□□□□ 0.52
USP28Q96RU2 PGAM5P1-201ENST00000518923 814 ntBASIC18.33■□□□□ 0.52
USP28Q96RU2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.33■□□□□ 0.52
USP28Q96RU2 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.33■□□□□ 0.52
USP28Q96RU2 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.33■□□□□ 0.52
USP28Q96RU2 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.33■□□□□ 0.52
USP28Q96RU2 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.33■□□□□ 0.52
USP28Q96RU2 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP28Q96RU2 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
USP28Q96RU2 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
USP28Q96RU2 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
USP28Q96RU2 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 AC026396.1-201ENST00000419388 421 ntBASIC18.32■□□□□ 0.52
USP28Q96RU2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 AC079140.1-201ENST00000508039 487 ntBASIC18.32■□□□□ 0.52
USP28Q96RU2 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.32■□□□□ 0.52
USP28Q96RU2 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP28Q96RU2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.32■□□□□ 0.52
USP28Q96RU2 AC112693.3-201ENST00000624819 1983 ntBASIC18.31■□□□□ 0.52
USP28Q96RU2 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.31■□□□□ 0.52
USP28Q96RU2 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.31■□□□□ 0.52
USP28Q96RU2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.31■□□□□ 0.52
USP28Q96RU2 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.31■□□□□ 0.52
USP28Q96RU2 MCCD1P2-201ENST00000423228 335 ntBASIC18.31■□□□□ 0.52
USP28Q96RU2 FAM86C2P-203ENST00000528684 1004 ntBASIC18.31■□□□□ 0.52
USP28Q96RU2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.31■□□□□ 0.52
USP28Q96RU2 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.31■□□□□ 0.52
USP28Q96RU2 AC026120.1-201ENST00000611536 926 ntBASIC18.31■□□□□ 0.52
USP28Q96RU2 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms