Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 MPV17-205ENST00000402310 906 ntTSL 5 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 PTPA-217ENST00000434095 870 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 KLK3-207ENST00000595952 969 ntTSL 3 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP3Q7Z494 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 TK1-203ENST00000588734 1681 ntTSL 2 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 AC091046.1-201ENST00000331871 207 ntBASIC21.4■■□□□ 1.02
NPHP3Q7Z494 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 ECM1P1-201ENST00000604092 1279 ntBASIC21.4■■□□□ 1.02
NPHP3Q7Z494 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 HLA-A-202ENST00000376806 1854 ntBASIC21.4■■□□□ 1.02
NPHP3Q7Z494 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP3Q7Z494 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP3Q7Z494 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP3Q7Z494 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP3Q7Z494 AL354989.2-201ENST00000435838 1540 ntBASIC21.39■■□□□ 1.02
NPHP3Q7Z494 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP3Q7Z494 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC21.39■■□□□ 1.02
NPHP3Q7Z494 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 MIR33B-201ENST00000385104 96 ntBASIC21.39■■□□□ 1.01
NPHP3Q7Z494 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 ACTBP8-201ENST00000403258 1108 ntBASIC21.39■■□□□ 1.01
NPHP3Q7Z494 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 AC016700.1-201ENST00000429424 312 ntBASIC21.39■■□□□ 1.01
NPHP3Q7Z494 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 RN7SL720P-201ENST00000488178 304 ntBASIC21.39■■□□□ 1.01
NPHP3Q7Z494 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 AC245884.6-201ENST00000515672 1067 ntBASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms