Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.3■□□□□ 0.36
KRT39Q6A163 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.3■□□□□ 0.36
KRT39Q6A163 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
KRT39Q6A163 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.3■□□□□ 0.36
KRT39Q6A163 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
KRT39Q6A163 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
KRT39Q6A163 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 AC018892.3-201ENST00000623986 2499 ntBASIC17.29■□□□□ 0.36
KRT39Q6A163 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.29■□□□□ 0.36
KRT39Q6A163 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
KRT39Q6A163 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.29■□□□□ 0.36
KRT39Q6A163 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.29■□□□□ 0.36
KRT39Q6A163 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.29■□□□□ 0.36
KRT39Q6A163 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.29■□□□□ 0.36
KRT39Q6A163 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.29■□□□□ 0.36
KRT39Q6A163 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.29■□□□□ 0.36
KRT39Q6A163 AC025678.2-201ENST00000562061 970 ntBASIC17.29■□□□□ 0.36
KRT39Q6A163 AC004449.1-201ENST00000564240 433 ntBASIC17.29■□□□□ 0.36
KRT39Q6A163 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.29■□□□□ 0.36
KRT39Q6A163 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 AC105917.1-201ENST00000506637 2539 ntBASIC17.29■□□□□ 0.36
KRT39Q6A163 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.29■□□□□ 0.36
KRT39Q6A163 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.29■□□□□ 0.36
KRT39Q6A163 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.29■□□□□ 0.36
KRT39Q6A163 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
KRT39Q6A163 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.29■□□□□ 0.36
KRT39Q6A163 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.29■□□□□ 0.36
KRT39Q6A163 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KRT39Q6A163 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
KRT39Q6A163 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
KRT39Q6A163 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
KRT39Q6A163 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 MTND6P24-201ENST00000440466 518 ntBASIC17.28■□□□□ 0.36
KRT39Q6A163 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.28■□□□□ 0.36
KRT39Q6A163 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 AL450472.2-201ENST00000603663 1156 ntBASIC17.28■□□□□ 0.36
KRT39Q6A163 AC006538.3-201ENST00000612495 578 ntBASIC17.28■□□□□ 0.36
KRT39Q6A163 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
KRT39Q6A163 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KRT39Q6A163 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.27■□□□□ 0.36
KRT39Q6A163 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.27■□□□□ 0.36
KRT39Q6A163 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.27■□□□□ 0.36
KRT39Q6A163 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.27■□□□□ 0.36
KRT39Q6A163 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms