Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 AC005622.1-201ENST00000636801 1703 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 NIN-202ENST00000324330 4364 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 AC091951.1-201ENST00000512854 2465 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 AC013726.1-201ENST00000563747 2285 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 AC105250.1-201ENST00000509378 2057 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 AC117947.1-201ENST00000427448 529 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 PAWRP1-201ENST00000451083 565 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
FOXA3P55318 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC12.11□□□□□ -0.47
FOXA3P55318 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 AC145285.6-201ENST00000604632 637 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 AL390755.1-201ENST00000623716 2027 ntBASIC12.11□□□□□ -0.47
FOXA3P55318 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA3P55318 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA3P55318 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
FOXA3P55318 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 U82695.1-201ENST00000635752 1889 ntBASIC12.1□□□□□ -0.47
FOXA3P55318 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA3P55318 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA3P55318 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA3P55318 AC011477.6-201ENST00000604980 1927 ntBASIC12.1□□□□□ -0.47
FOXA3P55318 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms