Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC004461.1-201ENST00000412461 403 ntBASIC15.62■□□□□ 0.09
HNF4AP41235 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.62■□□□□ 0.09
HNF4AP41235 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.62■□□□□ 0.09
HNF4AP41235 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.62■□□□□ 0.09
HNF4AP41235 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.62■□□□□ 0.09
HNF4AP41235 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.62■□□□□ 0.09
HNF4AP41235 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.62■□□□□ 0.09
HNF4AP41235 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HNF4AP41235 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.62■□□□□ 0.09
HNF4AP41235 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.62■□□□□ 0.09
HNF4AP41235 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.62■□□□□ 0.09
HNF4AP41235 AL691403.2-201ENST00000618460 490 ntBASIC15.62■□□□□ 0.09
HNF4AP41235 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HNF4AP41235 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HNF4AP41235 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HNF4AP41235 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HNF4AP41235 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
HNF4AP41235 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
HNF4AP41235 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HNF4AP41235 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
HNF4AP41235 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HNF4AP41235 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.62■□□□□ 0.09
HNF4AP41235 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.62■□□□□ 0.09
HNF4AP41235 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
HNF4AP41235 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
HNF4AP41235 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.61■□□□□ 0.09
HNF4AP41235 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.61■□□□□ 0.09
HNF4AP41235 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.61■□□□□ 0.09
HNF4AP41235 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HNF4AP41235 AC004967.1-201ENST00000453589 447 ntBASIC15.61■□□□□ 0.09
HNF4AP41235 AC069335.1-201ENST00000489972 472 ntBASIC15.61■□□□□ 0.09
HNF4AP41235 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.61■□□□□ 0.09
HNF4AP41235 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.61■□□□□ 0.09
HNF4AP41235 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.61■□□□□ 0.09
HNF4AP41235 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.61■□□□□ 0.09
HNF4AP41235 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.61■□□□□ 0.09
HNF4AP41235 KRT8P23-201ENST00000560090 1207 ntBASIC15.61■□□□□ 0.09
HNF4AP41235 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.61■□□□□ 0.09
HNF4AP41235 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
HNF4AP41235 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HNF4AP41235 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 AC132872.4-202ENST00000622924 2756 ntBASIC15.61■□□□□ 0.09
HNF4AP41235 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HNF4AP41235 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 AC011477.6-201ENST00000604980 1927 ntBASIC15.6■□□□□ 0.09
HNF4AP41235 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
HNF4AP41235 FOXO1B-201ENST00000504678 1527 ntBASIC15.6■□□□□ 0.09
HNF4AP41235 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 AC142381.1-201ENST00000426099 345 ntBASIC15.6■□□□□ 0.09
HNF4AP41235 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.6■□□□□ 0.09
HNF4AP41235 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.6■□□□□ 0.09
HNF4AP41235 SNHG9-202ENST00000564014 471 ntBASIC15.6■□□□□ 0.09
HNF4AP41235 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 AL513210.1-201ENST00000629608 234 ntBASIC15.6■□□□□ 0.09
HNF4AP41235 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.6■□□□□ 0.09
HNF4AP41235 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms