Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 AL596087.1-201ENST00000400979 1969 ntBASIC15.16■□□□□ 0.02
SOX3P41225 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.16■□□□□ 0.02
SOX3P41225 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SOX3P41225 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.16■□□□□ 0.02
SOX3P41225 PKD1P5-201ENST00000532415 10291 ntBASIC15.15■□□□□ 0.02
SOX3P41225 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.15■□□□□ 0.02
SOX3P41225 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.15■□□□□ 0.02
SOX3P41225 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 FAM86GP-201ENST00000448322 971 ntBASIC15.15■□□□□ 0.02
SOX3P41225 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.15■□□□□ 0.02
SOX3P41225 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.15■□□□□ 0.02
SOX3P41225 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 FOXO1B-201ENST00000504678 1527 ntBASIC15.15■□□□□ 0.02
SOX3P41225 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SOX3P41225 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.15■□□□□ 0.02
SOX3P41225 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX3P41225 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.15■□□□□ 0.02
SOX3P41225 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX3P41225 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX3P41225 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.14■□□□□ 0.01
SOX3P41225 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX3P41225 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms