Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.87■□□□□ 0.29
BDNFP23560 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.87■□□□□ 0.29
BDNFP23560 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.87■□□□□ 0.29
BDNFP23560 SPDYE19P-201ENST00000338590 713 ntBASIC16.87■□□□□ 0.29
BDNFP23560 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.87■□□□□ 0.29
BDNFP23560 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.87■□□□□ 0.29
BDNFP23560 AC015922.1-201ENST00000421102 1152 ntBASIC16.87■□□□□ 0.29
BDNFP23560 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.87■□□□□ 0.29
BDNFP23560 CRB3P1-201ENST00000449338 276 ntBASIC16.87■□□□□ 0.29
BDNFP23560 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
BDNFP23560 DOC2GP-202ENST00000514950 1163 ntBASIC16.87■□□□□ 0.29
BDNFP23560 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.87■□□□□ 0.29
BDNFP23560 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.87■□□□□ 0.29
BDNFP23560 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
BDNFP23560 SRD5A3P1-201ENST00000603021 949 ntBASIC16.87■□□□□ 0.29
BDNFP23560 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.87■□□□□ 0.29
BDNFP23560 REXO1L1P-202ENST00000608646 1974 ntBASIC16.87■□□□□ 0.29
BDNFP23560 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.87■□□□□ 0.29
BDNFP23560 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
BDNFP23560 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
BDNFP23560 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 AC007541.1-201ENST00000570282 1469 ntBASIC16.86■□□□□ 0.29
BDNFP23560 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.86■□□□□ 0.29
BDNFP23560 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
BDNFP23560 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.86■□□□□ 0.29
BDNFP23560 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.86■□□□□ 0.29
BDNFP23560 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.86■□□□□ 0.29
BDNFP23560 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.86■□□□□ 0.29
BDNFP23560 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.86■□□□□ 0.29
BDNFP23560 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
BDNFP23560 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
BDNFP23560 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
BDNFP23560 AL589987.1-201ENST00000453380 819 ntBASIC16.86■□□□□ 0.29
BDNFP23560 AL132655.2-201ENST00000596276 594 ntBASIC16.86■□□□□ 0.29
BDNFP23560 AC074044.1-201ENST00000609673 707 ntBASIC16.86■□□□□ 0.29
BDNFP23560 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.86■□□□□ 0.29
BDNFP23560 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
BDNFP23560 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.86■□□□□ 0.29
BDNFP23560 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BDNFP23560 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.85■□□□□ 0.29
BDNFP23560 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
BDNFP23560 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.85■□□□□ 0.29
BDNFP23560 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.85■□□□□ 0.29
BDNFP23560 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.85■□□□□ 0.29
BDNFP23560 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.85■□□□□ 0.29
BDNFP23560 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
BDNFP23560 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.85■□□□□ 0.29
BDNFP23560 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.85■□□□□ 0.29
BDNFP23560 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms