Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
SEMA3DO95025 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.43■□□□□ 0.06
SEMA3DO95025 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.43■□□□□ 0.06
SEMA3DO95025 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 AP005117.1-202ENST00000581724 1908 ntBASIC15.43■□□□□ 0.06
SEMA3DO95025 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.43■□□□□ 0.06
SEMA3DO95025 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.42■□□□□ 0.06
SEMA3DO95025 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.42■□□□□ 0.06
SEMA3DO95025 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
SEMA3DO95025 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.42■□□□□ 0.06
SEMA3DO95025 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.42■□□□□ 0.06
SEMA3DO95025 AC069335.1-201ENST00000489972 472 ntBASIC15.42■□□□□ 0.06
SEMA3DO95025 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SEMA3DO95025 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.42■□□□□ 0.06
SEMA3DO95025 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.42■□□□□ 0.06
SEMA3DO95025 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.42■□□□□ 0.06
SEMA3DO95025 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.42■□□□□ 0.06
SEMA3DO95025 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SEMA3DO95025 AC055717.3-201ENST00000622967 595 ntBASIC15.42■□□□□ 0.06
SEMA3DO95025 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.42■□□□□ 0.06
SEMA3DO95025 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.42■□□□□ 0.06
SEMA3DO95025 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.42■□□□□ 0.06
SEMA3DO95025 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SEMA3DO95025 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.41■□□□□ 0.06
SEMA3DO95025 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 AL592309.1-201ENST00000443127 649 ntBASIC15.41■□□□□ 0.06
SEMA3DO95025 CEND1P1-201ENST00000451006 455 ntBASIC15.41■□□□□ 0.06
SEMA3DO95025 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 RNA5SP410-201ENST00000516285 106 ntBASIC15.41■□□□□ 0.06
SEMA3DO95025 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.41■□□□□ 0.06
SEMA3DO95025 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 AC105339.1-204ENST00000636249 355 ntBASIC15.41■□□□□ 0.06
SEMA3DO95025 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.41■□□□□ 0.06
SEMA3DO95025 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms