Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP2AO43633 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP2AO43633 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP2AO43633 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP2AO43633 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
CHMP2AO43633 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP2AO43633 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CHMP2AO43633 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP2AO43633 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
CHMP2AO43633 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP2AO43633 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
CHMP2AO43633 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.48
CHMP2AO43633 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP2AO43633 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CHMP2AO43633 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
CHMP2AO43633 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP2AO43633 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP2AO43633 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP2AO43633 KRT8P37-201ENST00000451609 1420 ntBASIC18.02■□□□□ 0.48
CHMP2AO43633 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.02■□□□□ 0.48
CHMP2AO43633 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP2AO43633 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP2AO43633 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP2AO43633 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP2AO43633 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP2AO43633 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP2AO43633 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.02■□□□□ 0.48
CHMP2AO43633 AC044860.1-202ENST00000559481 777 ntBASIC18.02■□□□□ 0.48
CHMP2AO43633 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP2AO43633 AC009407.1-201ENST00000568958 598 ntBASIC18.02■□□□□ 0.48
CHMP2AO43633 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP2AO43633 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.02■□□□□ 0.48
CHMP2AO43633 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.02■□□□□ 0.48
CHMP2AO43633 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP2AO43633 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP2AO43633 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.02■□□□□ 0.47
CHMP2AO43633 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.02■□□□□ 0.47
CHMP2AO43633 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP2AO43633 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.02■□□□□ 0.47
CHMP2AO43633 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP2AO43633 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.02■□□□□ 0.47
CHMP2AO43633 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CHMP2AO43633 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 AP001282.1-201ENST00000531301 1499 ntBASIC18.01■□□□□ 0.47
CHMP2AO43633 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 AZGP1P1-201ENST00000411909 902 ntBASIC18.01■□□□□ 0.47
CHMP2AO43633 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.01■□□□□ 0.47
CHMP2AO43633 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CHMP2AO43633 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP2AO43633 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CHMP2AO43633 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP2AO43633 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP2AO43633 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP2AO43633 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP2AO43633 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CHMP2AO43633 NFIC-211ENST00000641145 8399 ntBASIC18■□□□□ 0.47
CHMP2AO43633 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18■□□□□ 0.47
CHMP2AO43633 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CHMP2AO43633 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms