Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
NPHP1O15259 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP1O15259 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.18■□□□□ 0.82
NPHP1O15259 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP1O15259 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
NPHP1O15259 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.17■□□□□ 0.82
NPHP1O15259 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
NPHP1O15259 AC006538.1-201ENST00000567905 1585 ntBASIC20.17■□□□□ 0.82
NPHP1O15259 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
NPHP1O15259 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NPHP1O15259 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.17■□□□□ 0.82
NPHP1O15259 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC20.17■□□□□ 0.82
NPHP1O15259 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 MIR4321-201ENST00000592276 80 ntBASIC20.17■□□□□ 0.82
NPHP1O15259 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
NPHP1O15259 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NPHP1O15259 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC20.17■□□□□ 0.82
NPHP1O15259 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 AC060834.1-201ENST00000443027 2032 ntBASIC20.17■□□□□ 0.82
NPHP1O15259 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP1O15259 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP1O15259 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP1O15259 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.16■□□□□ 0.82
NPHP1O15259 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.16■□□□□ 0.82
NPHP1O15259 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP1O15259 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP1O15259 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
NPHP1O15259 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP1O15259 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.16■□□□□ 0.82
NPHP1O15259 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 AC133539.2-201ENST00000604757 467 ntBASIC20.16■□□□□ 0.82
NPHP1O15259 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
NPHP1O15259 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.16■□□□□ 0.82
NPHP1O15259 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP1O15259 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 AL139384.1-201ENST00000612143 3047 ntBASIC20.16■□□□□ 0.82
NPHP1O15259 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP1O15259 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms