Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 AC020658.6-201ENST00000623564 1870 ntBASIC13.02□□□□□ -0.32
FOXA2Q9Y261 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 KRT18P13-201ENST00000400056 1290 ntBASIC13.02□□□□□ -0.33
FOXA2Q9Y261 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 FAM86C2P-203ENST00000528684 1004 ntBASIC13.02□□□□□ -0.33
FOXA2Q9Y261 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 RARRES2P8-201ENST00000566335 367 ntBASIC13.02□□□□□ -0.33
FOXA2Q9Y261 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 WASH6P-202ENST00000359512 1437 ntBASIC13.02□□□□□ -0.33
FOXA2Q9Y261 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA2Q9Y261 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 AC013268.4-201ENST00000637413 2228 ntBASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 UPF3AP3-201ENST00000420996 769 ntBASIC13.01□□□□□ -0.33
FOXA2Q9Y261 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 AC010327.4-202ENST00000591484 748 ntBASIC13.01□□□□□ -0.33
FOXA2Q9Y261 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 PPT1-215ENST00000641471 2368 ntBASIC13.01□□□□□ -0.33
FOXA2Q9Y261 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA2Q9Y261 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms