Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AC023310.3-201ENST00000557027 670 ntBASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 AC100756.1-201ENST00000562736 682 ntBASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 AC138749.3-201ENST00000567691 622 ntBASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 AC116165.1-201ENST00000611806 668 ntBASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM35Q9UPQ4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 SPDYE19P-201ENST00000338590 713 ntBASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 DOC2GP-202ENST00000514950 1163 ntBASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 LINC02084-201ENST00000606069 1096 ntBASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM35Q9UPQ4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.7■□□□□ 0.91
TRIM35Q9UPQ4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 AP003680.1-201ENST00000598970 3660 ntBASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 TOMM22P5-201ENST00000416399 439 ntBASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM35Q9UPQ4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 API5-211ENST00000534695 560 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms