Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 GRN-214ENST00000589265 1632 ntTSL 5 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AD000864.1-201ENST00000624076 2295 ntBASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 AC134407.2-201ENST00000625089 1978 ntBASIC30.16■■■□□ 2.42
SHROOM4Q9ULL8 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 AC092364.2-201ENST00000596710 2692 ntBASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 AC012441.1-201ENST00000446669 685 ntBASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 ENPP7P5-201ENST00000541031 1031 ntBASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 AL662844.4-201ENST00000606367 2838 ntBASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC30.15■■■□□ 2.42
SHROOM4Q9ULL8 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 KRT18P64-201ENST00000434946 1219 ntBASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 ABBA01031663.1-201ENST00000635630 790 ntBASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SHROOM4Q9ULL8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC30.14■■■□□ 2.41
SHROOM4Q9ULL8 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC30.14■■■□□ 2.41
SHROOM4Q9ULL8 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
SHROOM4Q9ULL8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
SHROOM4Q9ULL8 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 RPL13P2-201ENST00000440687 659 ntBASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 BCRP2-202ENST00000447763 634 ntBASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 BCRP6-201ENST00000510112 632 ntBASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 BCRP7-201ENST00000511549 544 ntBASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SHROOM4Q9ULL8 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 FXR1-221ENST00000491674 365 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 SCARNA20.5-201ENST00000516991 142 ntBASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms