Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 ELK2BP-201ENST00000415014 1224 ntBASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM55Q9BYV6 SSR4P1-203ENST00000599569 2260 ntBASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 GPAA1P2-202ENST00000606848 1787 ntBASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 AC006504.4-201ENST00000592118 1568 ntBASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 AL596442.2-201ENST00000610240 980 ntBASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 AL589182.2-201ENST00000619332 1049 ntBASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM55Q9BYV6 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 MCCD1P2-201ENST00000423228 335 ntBASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM55Q9BYV6 AC004706.3-202ENST00000621574 984 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms