Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 AL662844.1-201ENST00000546340 181 ntBASIC9.66□□□□□ -0.86
LIMD2Q9BT23 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 PRKN-208ENST00000610470 531 ntTSL 2 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 PRKN-209ENST00000612485 225 ntTSL 5 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 AMT-206ENST00000458307 1860 ntTSL 2 BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LIMD2Q9BT23 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 KRT8P39-201ENST00000396270 1433 ntBASIC9.65□□□□□ -0.86
LIMD2Q9BT23 AL645728.1-201ENST00000366221 2101 ntBASIC9.65□□□□□ -0.86
LIMD2Q9BT23 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 TPM4P1-201ENST00000436100 807 ntBASIC9.65□□□□□ -0.86
LIMD2Q9BT23 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 IGHV3-65-201ENST00000523210 341 ntBASIC9.65□□□□□ -0.86
LIMD2Q9BT23 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 CYP2A7P1-201ENST00000595391 815 ntBASIC9.65□□□□□ -0.86
LIMD2Q9BT23 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC9.65□□□□□ -0.86
LIMD2Q9BT23 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 PPP1R26P4-201ENST00000619065 3527 ntBASIC9.65□□□□□ -0.87
LIMD2Q9BT23 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 USP3-204ENST00000540797 5474 ntTSL 2 BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.87
LIMD2Q9BT23 PTENP1-202ENST00000532280 3996 ntBASIC9.65□□□□□ -0.87
LIMD2Q9BT23 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC9.64□□□□□ -0.87
LIMD2Q9BT23 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LIMD2Q9BT23 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LIMD2Q9BT23 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LIMD2Q9BT23 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
LIMD2Q9BT23 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LIMD2Q9BT23 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LIMD2Q9BT23 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC9.64□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms